Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00180 ATGAGAGGAACTAAGCGCTCTGGCTTATCGGATTCGAATCCCGACACTAACGATTCTGTGTTTGGTAACAAAAGAATATTGGCGGGATCCTCGTTCGATATTCAGAGAGCAGAACCATCTCAACAACAGAAGACAAAAACACCTACACTTGATGTGCGCCGGGCGGAGTCTTCTCGGCAGCATGTGAGAGCACTTAACACTCAATTCGCAAGTTGGGTGCAGTCACAATTAACAAATCATCCAGATGAACTTTGGGAAGATGGTATCCGCGATTACTTGACTCATGCCTCAAGTATTATGGAAAAGTTTAGTGATATTGTCGAGTGGCTCAAAGCAAAAGCTGTTGAAGGAGAAAGTTCACCTCCTACTGGATCTCTCAAGTCTGAAAAGAAAACAGAAACTGAACACAAGAAGACTGATGTAAAACTATTTCAAGGACAAACTAGTTTCGCACCTGCTAGTGCAACTACGAGCATTGCAACTTCATGGACCTCTGGGGCATTGTTCAACCATCAAGCCCCTAGCATATTTGGATTAAAAAATTCAGTTCCTGCCAATGGTGTTTCTATTGGTCAAACTGCAGTCTCGAATTCAGAGAATGCGGATGAAAATGACTTGGAGCAGCCAAGCAGCCCATCCGTAAAGAAGTCTGAAGAGAAAGGGGTGGTTGTAGTGCATGAAGTTAAGTGCAAGCTTTATGTGAAGTCAACTGATCCAACAGATAAAGATGCATGGAAAGACAAGGGCACAGGGCATCTTTCCATCAAGTGCAAGGAGGGTATCAGCAAGGGTACAAAGGAATCCAAACCAACAATTGTAATTCGAAATGATGTGGGGAGACTGCTTCTGAATGCTTCGATCTATCCAGGGATCAAAACAAGTACTCAAAAGAATTCCCTTGTTGCAATATTCCATACTTCGAGCGAAGGTGATACGAACGAAAATGGCGACAAAGATACAGTGGTGGCCCGCACGTACTTGATTCGATTAAAAACAGAGGATGATCGGAATAAGCTAGCAACAGCAATTCAAGAATGTGCTCCCGCTCCATGA 1053 43.59 MRGTKRSGLSDSNPDTNDSVFGNKRILAGSSFDIQRAEPSQQQKTKTPTLDVRRAESSRQHVRALNTQFASWVQSQLTNHPDELWEDGIRDYLTHASSIMEKFSDIVEWLKAKAVEGESSPPTGSLKSEKKTETEHKKTDVKLFQGQTSFAPASATTSIATSWTSGALFNHQAPSIFGLKNSVPANGVSIGQTAVSNSENADENDLEQPSSPSVKKSEEKGVVVVHEVKCKLYVKSTDPTDKDAWKDKGTGHLSIKCKEGISKGTKESKPTIVIRNDVGRLLLNASIYPGIKTSTQKNSLVAIFHTSSEGDTNENGDKDTVVARTYLIRLKTEDDRNKLATAIQECAPAP 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1410714 1416308 + Cp4.1LG13g01790.1 Cpe13g00180 479378

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00180 350 PANTHER RAN BINDING PROTEIN 6 349 IPR045255 -
Cpe13g00180 350 PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP50 6 349 - -
Cpe13g00180 350 CDD RanBD_NUP50 218 347 - -
Cpe13g00180 350 SUPERFAMILY PH domain-like 216 348 - -
Cpe13g00180 350 SMART ranbd_3 206 346 IPR000156 GO:0046907
Cpe13g00180 350 MobiDBLite consensus disorder prediction 1 56 - -
Cpe13g00180 350 MobiDBLite consensus disorder prediction 1 24 - -
Cpe13g00180 350 MobiDBLite consensus disorder prediction 197 219 - -
Cpe13g00180 350 Gene3D - 110 349 IPR011993 -
Cpe13g00180 350 Pfam RanBP1 domain 214 347 IPR000156 GO:0046907
Cpe13g00180 350 MobiDBLite consensus disorder prediction 34 48 - -
Cpe13g00180 350 MobiDBLite consensus disorder prediction 197 211 - -
Cpe13g00180 350 MobiDBLite consensus disorder prediction 116 139 - -
Cpe13g00180 350 ProSiteProfiles Ran binding domain type 1 profile. 216 350 IPR000156 GO:0046907
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00180 K14295 NUP50, NPAP60; nuclear pore complex protein Nup50 - csv:101205107 560.451
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g406 Blo02g01094 . . Bda08g00534 Bpe05g00626 . . . . . . Cma15g01194 . Car15g01082 . . . . . . . . . . . . . . . . . Cone8ag0333 Cone12ag0330 . . . Csa05g00328 Chy09g01181 . . . . . . . Bma05g00803 . . . Cmo15g01258 . . . . . Cpe13g00180 Bhi12g00197 . . . . . . Cla01g00305 Cam01g0317 Cec01g0307 Cco01g0324 Clacu01g0318 Cmu01g0303 Cre09g2206 Lsi09g00314 . . Cme09g01714
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006692 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 5 4 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00180 Cpe_Chr13 FPKM 11.010753 17.938034 20.603552 19.29582 25.617554 17.779501 17.525023 10.091908 8.575311 8.782336