Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00183 CCCAAATTCGATTTCATGCGAAATGCAGCAGAGGCTCCGGCGGTGTCACACTACGACTACATAATCGTAGGAGGTGGGACGGCGGGATGTCCGTTGGCGGCGACGCTGTCGGAAAATCACAAGGTATTGCTGTTAGAACGCGGTGGTTCTCCGTACGGAAACTCCAATATCACCAACTTATCGGCCTTCGGCGCCGCACTTGCCGACCTGTCGGAATCGTCGCCGTCGCAACGTTTCGTGTCGGAGGACGGCGTGATCAACGCTCGCGCTCGTGTCCTCGGCGGCGGAAGCTGCCTGAATGCCGGATTTTACTCACGTGCGTCACTTGATTACGTCAGGTTCTCGTCGCACTACAAAAGACGCAAAAGGCCAAGGGCCCACGGAGTGGTCTTCGAAGACTCGAAGGGAATCAAACACAGAGCGTACCTAAGGAATGGGCCTGAGAGCGAAGTAATCATATCAGCGGGCTGTCTTGGAAGCCCACAACTTCTGATGCTAAGTGGACTGGGCCCGGCCCAACATCTAAAGGCCCATAACATTACTGTGCTTTTGGATCAGCCCATGGTCGGGCAGAGGGTGTCCGATAACCCAATGAACGCCGTTTTCGTTCCATCCCCCGTTCCGGTGGAGGTGTCGTTGATTGAGGTCGTCGGAATTACCCATAACGGAACGTACATCGAAGCCGCCAGCGGCGAGAGCTTCGCCGGCGGCCCTTCTTCCAGAGACTTCGGCATGTTCTCTCCTAAGATCGGTCAGCTATCGACAGTGCCACCGAAGCAAAGAACACCAGAAGCCATAGCCGAAGCCTGGGAGCTTATGAACAAACTGGACGAAGCCGCATTCAGAGGCGGCTTCATCCTTGAAAAGATAATGGGCCCACTCTCCTCGGGTCATTTGGAGCTCCGAACCCGAGACCCGAACGACAACCCGTCCGTCACATTCAACTACTTCAAAGATCCGACTGACCTACACCGTTGCGTCGCCGGCATAAACATAATCCGGCGAATCATCGAGTCAAAATCCTTCGCCAAGTTCCGATACCAAAACGTGTCGATGGCGACGCTTCTGAATATGACGGCGAGTACATGGGAGTCAGAATATTGA 1104 54.71 PKFDFMRNAAEAPAVSHYDYIIVGGGTAGCPLAATLSENHKVLLLERGGSPYGNSNITNLSAFGAALADLSESSPSQRFVSEDGVINARARVLGGGSCLNAGFYSRASLDYVRFSSHYKRRKRPRAHGVVFEDSKGIKHRAYLRNGPESEVIISAGCLGSPQLLMLSGLGPAQHLKAHNITVLLDQPMVGQRVSDNPMNAVFVPSPVPVEVSLIEVVGITHNGTYIEAASGESFAGGPSSRDFGMFSPKIGQLSTVPPKQRTPEAIAEAWELMNKLDEAAFRGGFILEKIMGPLSSGHLELRTRDPNDNPSVTFNYFKDPTDLHRCVAGINIIRRIIESKSFAKFRYQNVSMATLLNMTASTWESEY 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1437733 1441281 + Cp4.1LG13g01830.1 Cpe13g00183 479381

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00183 367 Gene3D - 2 115 IPR036188 -
Cpe13g00183 367 SUPERFAMILY FAD-linked reductases, C-terminal domain 194 350 - -
Cpe13g00183 367 Pfam GMC oxidoreductase 122 197 IPR000172 GO:0016614|GO:0050660
Cpe13g00183 367 Pfam GMC oxidoreductase 18 109 IPR000172 GO:0016614|GO:0050660
Cpe13g00183 367 Gene3D - 120 316 IPR036188 -
Cpe13g00183 367 PANTHER OSJNBA0019K04.7 PROTEIN 3 113 - -
Cpe13g00183 367 PANTHER OSJNBA0019K04.7 PROTEIN 122 361 - -
Cpe13g00183 367 SUPERFAMILY FAD/NAD(P)-binding domain 15 220 IPR036188 -
Cpe13g00183 367 Pfam GMC oxidoreductase 293 350 IPR007867 GO:0016614
Cpe13g00183 367 Gene3D - 196 354 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00183 - - - csv:101219817 416.001
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00917 Cpe-Chr11:7517246 Cpe13g00183 Cpe-Chr13:1437733 2.60E-30 dispersed
Cpe13g00183 Cpe-Chr13:1437733 Cpe17g00483 Cpe-Chr17:3582651 7.09E-35 transposed
Cpe13g00183 Cpe-Chr13:1437733 Cpe12g00620 Cpe-Chr12:6128675 1.11E-35 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g411 . . . . . . Bma07g01630 . . . . Cma15g01191 . Car15g01079 . . . . . . . . . . . . . . . . . Cone8ag0334 . . . . Csa05g00331 Chy09g01178 . . . . Bda09g00061 Bpe08g01472 . . . . . Cmo15g01255 . . . . . Cpe13g00183 Bhi12g00189 . . . . . Lcy12g1709 Cla01g00308 Cam01g0320 Cec01g0311 Cco01g0328 Clacu01g0321 Cmu01g0306 Cre09g2203 . . . Cme09g01711
Vvi16g576 . . . . . . . . . . . . . . . . . . . . . . . . Cla01g00308 Cam01g0320 Cec01g0311 Cco01g0328 Clacu01g0321 Cmu01g0306 Cre09g2203 . . . . . . . . . . . . . . . . . . . . . . . . Cpe13g00183 Bhi12g00189 . . . . . Lcy12g1709 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003433 2 3 0 2 2 2 1 2 2 1 2 2 0 1 1 0 2 3 1 2 1 1 2 2 2 1 2 1 2 3 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00183 Cpe_Chr13 FPKM 17.261763 18.353258 1.576433 1.22157 4.96344 4.944379 5.992284 0.107219 0.0 0.0