Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00187 ATGGTGCGAGGCAAGACTGAAATGAAGCGCATAGAGAATGCCACAAGCCGGCAAGTCACGTTTTCAAAGCGCAGAAATGGACTGCTGAAGAAAGCCTTTGAGCTATCAGTTCTGTGCGACGCTGAAGTTGCCCTTATAATCTTCTCTCCAAGAGGCAAACTTTACGAGTTTTCCAATTTCAGTATGAACAAGACAATTGATCGTTATCAGAACAGGACCAAAGATTTGATGTCGAGTAACAACACAGCTGTTGAAGATTTGCAGTTGGAGAAGGAACTCGACTCGTGTACCATCACTAAGAAGTTGGAGCACCTTGAAGTTAGTAAAAGAAAACTGTTGGGAGGTGGGTTGGATTCGTGTTCGATCGACGAGTTGCAGCAGCTCGAAAGACAGCTTGAAAGAAGCTTAAGCAAGATTAGGTCAAGAAAGTATCAAATTTTGAAGGAAGAAATTATGAAGCTGAAGGAAGAGGAGAAACTGTTGCTGGAAGAAAATGCAGCACTGCAGGTGAAGGTTGGAAGAGAATCGTTAAAAAAACGAGAAACGAAGCAGAGATCAGAATCAAAGGAACAAGACATAATGGATGTGGAAACTGAACTGTTCATAGGACTCCCAGAAAGAAGAACAACCACCAATGGCTTCCTCTAG 648 42.75 MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSNFSMNKTIDRYQNRTKDLMSSNNTAVEDLQLEKELDSCTITKKLEHLEVSKRKLLGGGLDSCSIDELQQLERQLERSLSKIRSRKYQILKEEIMKLKEEEKLLLEENAALQVKVGRESLKKRETKQRSESKEQDIMDVETELFIGLPERRTTTNGFL 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1468337 1472843 + Cp4.1LG13g01770.1 Cpe13g00187 479385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00187 215 Pfam K-box region 97 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe13g00187 215 SUPERFAMILY SRF-like 3 83 IPR036879 GO:0003677|GO:0046983
Cpe13g00187 215 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Cpe13g00187 215 PANTHER MADS BOX PROTEIN 1 206 - -
Cpe13g00187 215 Coils Coil 122 142 - -
Cpe13g00187 215 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cpe13g00187 215 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cpe13g00187 215 Coils Coil 179 199 - -
Cpe13g00187 215 PANTHER MADS-BOX PROTEIN SOC1 1 206 - -
Cpe13g00187 215 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cpe13g00187 215 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cpe13g00187 215 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cpe13g00187 215 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cpe13g00187 215 Gene3D - 14 92 IPR036879 GO:0003677|GO:0046983
Cpe13g00187 215 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cpe13g00187 215 Coils Coil 144 171 - -
Cpe13g00187 215 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe05g00296 Cpe13g00187 CCT
Cpe05g00693 Cpe13g00187 CCT
Cpe05g00693 Cpe13g00187 ECH
Cpe08g00501 Cpe13g00187 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00693 Cpe-Chr5:4253722 Cpe13g00187 Cpe-Chr13:1468337 2.13E-56 dispersed
Cpe13g00055 Cpe-Chr13:415744 Cpe13g00187 Cpe-Chr13:1468337 9.18E-53 dispersed
Cpe13g00187 Cpe-Chr13:1468337 Cpe17g00324 Cpe-Chr17:2200090 4.29E-71 dispersed
Cpe13g00187 Cpe-Chr13:1468337 Cpe03g01699 Cpe-Chr3:12926741 1.14E-63 wgd
Cpe13g00187 Cpe-Chr13:1468337 Cpe05g00296 Cpe-Chr5:1658238 9.06E-100 wgd
Cpe13g00187 Cpe-Chr13:1468337 Cpe08g00501 Cpe-Chr8:3241950 5.35E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50384 PF01486 K-box 3.60E-21 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00187 - - csv:101220518 309.686