Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00188 AGTCCCTTTCCTTGTCTCTCTATCACTGTCCTCCTTCTCTCTCTTCACTGTCTTTCTCTCTCTTCCTCCAATTTCATCCAGATCTCTTCCATTGGAGAATCAATGGAAGATCAAGCCCGGACCCCTCAATCATCTGCTAGGGCTTCACCTTCTTCTTCTTCCTCTTCCTCCTCCAATTTGCAGCTCAATTTGCCTCCTTCAATGTCTAGGGCTGCTCACTCACTTGAAACCCTAACTCCATCTCGCCAAATTGGCCGCATGATCAATATCAATCACCATTTGTCTCCATCCAGAGCTATCTACTCTGATAGGTTTATACCAAGTAGATCTGGTTCCAATTTTGCCCTATTTGATATTTCCCCTGTCTCTAATTCCGCTTCTGATGGTCGCGAAGATACTTCTACTGCTTATGCTACGCTTCTTCGAACGGCTTTGTTTGGCCCTGATTCTGGAGTAGTTCCTCCTGCTACTCCTGAGAAGAGAAGCTCCCCAATGTGCCTTCCTAATCATAATATTTTTCGCTATAAAACCGAGACTAGGAGGTCAATGCACTCCCTCTCGCCTTTTGGGTTTGATGATGCGGCTCGTGGGCTTAGTCCTAGCCCTGTTAAGACTCCACGGAAGGTTCCTCGATCGCCTTATAAGGTCTTGGATGCACCTGCTCTTCAAGATGATTTTTATCTGAATCTTGTGGATTGGTCTTCGCATAATGTGCTTGCTGTTGGGTTGGGTAATTGTGTTTATCTCTGGAATGCGTGCAGTAGTAAGGTCACCAAGTTATGTGACTTGGGAATTGATGACAGTGTGTGTTCAGTGGGCTGGGCACAGCGTGGAACTCATCTTGCTGTTGGCACTAGCAATGGAAAAGTCCAGATTTGGGATGCATCACGCTGTAAAAGGGTTAGGACCATGGAGGGTCATCGGTTACGAGTTGGGGCCTTAGCTTGGAGCTCGTCTCTTTTATCATCTGGTAGCCGGGATAAAAGTATCCTTCAACGAGATATTCGAGCTCAGGATGATTTTACTTCTAAACTATCTGGCCATAAATCAGAGGTTTGTGGATTGAAATGGTCGTACGATAACCGTGAATTAGCATCAGGTGGAAACGATAACAGATTATTCGTTTGGAATCAACATTCAACCCAACCAGTACTTAAATTTTATGAGCACACAGCTGCTGTAAAAGCTATAGCATGGTCTCCTCATCTTCATGGACTACTCGCATCAGGGGGCGGAACTGCAGACCGATGCATTCGTTTTTGGAACACAACGACCAATACACATTTGAGCTGCATGGACACTGGAAGTCAGGTGTGCAATCTCGCGTGGTCTAAGAATGTTAATGAACTTGTTAGTACTCATGGGTTCTCCCAAAACCAGATAATAGTCTGGAGATATCCAACTATGTCTAAGTTGGCAACATTGACCGGCCATACTTTCAGAGTTCTTTATCTTGCCATATCTCCTGATGGACAGACCATTGTAACAGGGGCGGGTGATGAAACGCTGAGATTTTGGAACGTCTTCCCGTCGCCTAAATCGCAGGTAATAAATCGTCTACTTGCATATAACACGGACAGTGAAATCGGAGCATCATTCCTAGGACGAACCACCATCCGTTAA 1623 45.35 SPFPCLSITVLLLSLHCLSLSSSNFIQISSIGESMEDQARTPQSSARASPSSSSSSSSNLQLNLPPSMSRAAHSLETLTPSRQIGRMININHHLSPSRAIYSDRFIPSRSGSNFALFDISPVSNSASDGREDTSTAYATLLRTALFGPDSGVVPPATPEKRSSPMCLPNHNIFRYKTETRRSMHSLSPFGFDDAARGLSPSPVKTPRKVPRSPYKVLDAPALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWAQRGTHLAVGTSNGKVQIWDASRCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQDDFTSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKFYEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLAWSKNVNELVSTHGFSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQVINRLLAYNTDSEIGASFLGRTTIR 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1474852 1478422 - Cp4.1LG13g01890.1 Cpe13g00188 479386

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00188 540 ProSitePatterns Trp-Asp (WD) repeats signature. 494 508 IPR019775 -
Cpe13g00188 540 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 475 508 - -
Cpe13g00188 540 Pfam WD domain, G-beta repeat 343 377 IPR001680 GO:0005515
Cpe13g00188 540 Pfam WD domain, G-beta repeat 382 422 IPR001680 GO:0005515
Cpe13g00188 540 Pfam WD domain, G-beta repeat 471 507 IPR001680 GO:0005515
Cpe13g00188 540 ProSiteProfiles Trp-Asp (WD) repeats profile. 262 303 IPR001680 GO:0005515
Cpe13g00188 540 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 345 377 - -
Cpe13g00188 540 MobiDBLite consensus disorder prediction 36 65 - -
Cpe13g00188 540 ProSiteProfiles Trp-Asp (WD) repeats profile. 475 508 IPR001680 GO:0005515
Cpe13g00188 540 Gene3D - 203 512 IPR015943 GO:0005515
Cpe13g00188 540 ProSiteProfiles Trp-Asp (WD) repeats profile. 345 386 IPR001680 GO:0005515
Cpe13g00188 540 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 57 540 IPR033010 GO:0010997|GO:0097027|GO:1904668
Cpe13g00188 540 Pfam Anaphase-promoting complex subunit 4 WD40 domain 264 318 IPR024977 -
Cpe13g00188 540 SMART WD40_4 468 507 IPR001680 GO:0005515
Cpe13g00188 540 SMART WD40_4 424 465 IPR001680 GO:0005515
Cpe13g00188 540 SMART WD40_4 297 334 IPR001680 GO:0005515
Cpe13g00188 540 SMART WD40_4 338 377 IPR001680 GO:0005515
Cpe13g00188 540 SMART WD40_4 210 251 IPR001680 GO:0005515
Cpe13g00188 540 SMART WD40_4 254 294 IPR001680 GO:0005515
Cpe13g00188 540 SMART WD40_4 380 422 IPR001680 GO:0005515
Cpe13g00188 540 PANTHER PROTEIN FIZZY-RELATED 1 57 540 - -
Cpe13g00188 540 SUPERFAMILY WD40 repeat-like 214 518 IPR036322 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00188 K03364 CDH1, FZR1; cell division cycle 20-like protein 1, cofactor of APC complex - csv:101220762 941.799
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g00294 Cpe13g00188 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g02307 Cpe-Chr1:19454933 Cpe13g00188 Cpe-Chr13:1474852 0 dispersed
Cpe05g00717 Cpe-Chr5:4397963 Cpe13g00188 Cpe-Chr13:1474852 4.77E-96 dispersed
Cpe13g00188 Cpe-Chr13:1474852 Cpe13g00867 Cpe-Chr13:7536415 3.75E-146 dispersed
Cpe13g00188 Cpe-Chr13:1474852 Cpe05g00294 Cpe-Chr5:1651209 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g425 . . . . . . . Bma14g00575 . . Cma02g01496 Cma15g01185 Car02g01258 Car15g01073 . . Cpe05g00294 . . . . . . . . . . . . . . . . Cone6ag0735 Cone9ag0739 . Csa05g00338 Chy09g01171 . Blo03g00379 . Bda07g00507 . . Bpe11g00694 . . . Cmo02g01537 Cmo15g01249 . . . . . Cpe13g00188 Bhi12g00333 . . Lac11g2159 Hepe06g1599 . Lcy12g1717 Cla01g00318 Cam01g0328 Cec01g0320 Cco01g0337 Clacu01g0330 Cmu01g0314 Cre09g2197 Lsi09g00323 . . Cme09g01704
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006983 1 1 1 1 1 1 4 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00188 Cpe_Chr13 FPKM 56.636524 58.500515 1.616213 2.072071 0.0 0.0 0.0 0.0 0.0 0.0