Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00189 ATGGGTTTCTTCTTCTTCTTCTTCTTCCGTCTGCTTCTCGCCATAACTTCATCAGCCTCATCAATGGCGTCCCTCAAAACTCAACCCCACAAACTCCAATCGACCCATCTTCTTGATCTCTACATCAGAGATTTCACATTGAATTCCCTCGACAATACAATCAAAACAGGGGCACTTCACACCGTCCCATTACCGGAAAATTTAACAGGCATCACCGTCGACACGGCCAGGTTCCGATGCGGCAGTTTACGGCGGTACGGGGCGTCGGTAGGAGAATTCCATCTGGGTGTCGGTGTTTCTCTGAACCCATGTGCAGAGAGAATCGTAATCATCCGGCAAAATTTGGGCTCCAATTGGTCTTCGATTTACTTCAACAACTACCATTTAATTGGGTACCAATTAGTCTCTTCAATTTTGGGGCTTTTGGCTTACAACCCTGGAAATTACACTAACACTTCAAGCTCCCCTGTTCCATTTGAGGTCGGAATTTCCACCGGAGAAAAACCCATTACCATAGATTTCCGGAATTCGACGAGAATGGGAAATATTTCGGGAATCAGGCCGATTTGTGCGAGCTTTGAAAGGGATGGGAGAGTGACATTGGCGAAGGAAATTTCGCCGTTGGTTTGCTCTGCTTTGAGACAGGGGCATTTTGGGTTAGTGGTGGAGGAGGCAGAGCCGGTTGAACTGAGGAAGAAGGAACGGCCGTGGAAGGTGGCCGTCGGAAGCTCGATTGGGGCGGCGATTGGAGCGTTTCTTTTGGGACTGCTTTTGGTGGCGATGTTTGTGAGAGTGAAACAGAGGACGAAAATGGAGGAGATGGAAGTTAGGGCTTATGAAGAGGAAGCTCTGCAGGTTTCGATGGTTGGACATGTCAGAGCTCCGACATCTCCGGGGACTCGGACTTCGCCGTCGATTGAAAATGAGTACTTGCCTCCGTCTAGTCGTCGTTGA 954 49.06 MGFFFFFFFRLLLAITSSASSMASLKTQPHKLQSTHLLDLYIRDFTLNSLDNTIKTGALHTVPLPENLTGITVDTARFRCGSLRRYGASVGEFHLGVGVSLNPCAERIVIIRQNLGSNWSSIYFNNYHLIGYQLVSSILGLLAYNPGNYTNTSSSPVPFEVGISTGEKPITIDFRNSTRMGNISGIRPICASFERDGRVTLAKEISPLVCSALRQGHFGLVVEEAEPVELRKKERPWKVAVGSSIGAAIGAFLLGLLLVAMFVRVKQRTKMEEMEVRAYEEEALQVSMVGHVRAPTSPGTRTSPSIENEYLPPSSRR 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1482909 1483862 + Cp4.1LG13g01780.1 Cpe13g00189 479387

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00189 317 PANTHER PROTEIN, PUTATIVE (DUF1191)-RELATED 11 311 IPR010605 -
Cpe13g00189 317 Pfam Protein of unknown function (DUF1191) 33 223 IPR010605 -
Cpe13g00189 317 MobiDBLite consensus disorder prediction 296 317 - -
Cpe13g00189 317 MobiDBLite consensus disorder prediction 293 317 - -
Cpe13g00189 317 PANTHER PROTEIN, PUTATIVE (DUF1191)-RELATED 11 311 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00189 - - - cmos:111430354 569.696
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g00293 Cpe13g00189 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g01017 Cpe-Chr10:5867988 Cpe13g00189 Cpe-Chr13:1482909 2.43E-46 dispersed
Cpe13g00189 Cpe-Chr13:1482909 Cpe19g00169 Cpe-Chr19:1374234 2.49E-39 dispersed
Cpe13g00189 Cpe-Chr13:1482909 Cpe05g00293 Cpe-Chr5:1645439 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g426 . . . . . . . . . . Cma02g01497 . Car02g01259 Car15g01072 . . Cpe05g00293 . . . . . . . . . . . . . . . . . Cone19ag1460 . Csa05g00339 Chy09g01170 Cme07g01592 . . . . . . . . . Cmo02g01538 Cmo15g01248 . . . . . Cpe13g00189 Bhi12g00336 . . Lac11g2160 Hepe06g1600 . Lcy12g1718 Cla01g00319 Cam01g0329 Cec01g0321 Cco01g0338 Clacu01g0331 Cmu01g0315 Cre09g2196 Lsi09g00324 Csa04g00632 . Cme09g01703
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008782 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00189 Cpe_Chr13 FPKM 7.273102 7.869858 9.538866 9.898141 9.651795 8.037645 9.76033 9.402164 9.922932 10.376307