Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00190 ATGGCTTCTTCTTTAGGCTTCAATTTCTTCTTCCTGCCATTGGTTTTCGCCATCTTCACCAGACCAACGCTCGCCGTGTTCAAACCAAGCGCGTGGAAGCTCGCTCATGCCACCTTTTATGGCGACGAAACTGCCTCCGCTACCATGGGAGGAGCTTGTGGGTATGGAAACTTGTTTACGAACGGTTATGGAACCGACACAGTAGCGTTAAGCTCGACATTGTTCAACAATGGCTATGCTTGTGGGACATGCTTTCAGATCAAATGCGTGCAGTCGAAGGCGTGTTACGCAAACGTGAAATACACCACCGTGACGGCGACAAACCTATGCCCGCCAAATTGGTCACAGGACTCGAACGCAGGCGGGTGGTGCAACCCACCAAGAGTTCACTTCGACATGGCCAAGCCGGCGTTCATGAAGATCGCTTGCTTGCAAGGAAATGGGTATTGGTTATTGGTGTACGTGATGAACGTAGGCGGCGGCGGCGATGTGTACTCAATGGCGGTGAAAGGAAGCAAAACGGGGTGGATAACAATGAGCCATAACTGGGGAGCTTCATACCAAGCTTTTTCATCATTGGGTGGCCAAGGCCTCTCTTTTAGAATCACTTCCTACACAACAAGAGAGACCCTTACTTTATGGAATGTCATTCCTTCAAATTGGCAAGTTGGGTTGACTTATAATTCTAATGTCAACTTCCGTTGA 705 49.08 MASSLGFNFFFLPLVFAIFTRPTLAVFKPSAWKLAHATFYGDETASATMGGACGYGNLFTNGYGTDTVALSSTLFNNGYACGTCFQIKCVQSKACYANVKYTTVTATNLCPPNWSQDSNAGGWCNPPRVHFDMAKPAFMKIACLQGNGYWLLVYVMNVGGGGDVYSMAVKGSKTGWITMSHNWGASYQAFSSLGGQGLSFRITSYTTRETLTLWNVIPSNWQVGLTYNSNVNFR 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1485047 1486197 - Cp4.1LG13g02000.1 Cpe13g00190 479388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00190 234 Pfam Lytic transglycolase 67 144 IPR009009 -
Cpe13g00190 234 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 142 IPR007112 -
Cpe13g00190 234 PANTHER EXPANSIN-A15 144 234 IPR002963 GO:0009664
Cpe13g00190 234 PANTHER EXPANSIN-A15 19 142 IPR002963 GO:0009664
Cpe13g00190 234 SUPERFAMILY PHL pollen allergen 144 229 IPR036749 -
Cpe13g00190 234 PANTHER EXPANSIN-A7 144 234 - -
Cpe13g00190 234 PANTHER EXPANSIN-A7 19 142 - -
Cpe13g00190 234 Gene3D - 18 147 IPR036908 -
Cpe13g00190 234 SMART dpbb_1 67 154 IPR007112 -
Cpe13g00190 234 PRINTS Expansin signature 62 76 IPR002963 GO:0009664
Cpe13g00190 234 PRINTS Expansin signature 102 112 IPR002963 GO:0009664
Cpe13g00190 234 PRINTS Expansin signature 121 138 IPR002963 GO:0009664
Cpe13g00190 234 Gene3D - 148 233 IPR036749 -
Cpe13g00190 234 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Cpe13g00190 234 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Cpe13g00190 234 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Cpe13g00190 234 PRINTS Expansin/Lol pI family signature 215 229 IPR007118 GO:0005576
Cpe13g00190 234 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 149 229 IPR007117 -
Cpe13g00190 234 Pfam Expansin C-terminal domain 145 218 IPR007117 -
Cpe13g00190 234 SUPERFAMILY Barwin-like endoglucanases 31 157 IPR036908 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe08g00789 Cpe13g00190 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00190 Cpe-Chr13:1485047 Cpe05g00925 Cpe-Chr5:6080077 4.59E-73 dispersed
Cpe13g00190 Cpe-Chr13:1485047 Cpe08g00789 Cpe-Chr8:6263251 4.42E-132 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00190 - - csv:101221231 444.506