Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00195 ATGACCCAGAGTCGATTATTCCGGACGCGCAATTCTAAACCCGACGAAGAAGCAGAACCCGCCACAAGCTGTGGTGGAAGAGCCGCCATGAGAGTCGTAGTACCTCTGCAAAGCGTCGTTCAAGGAAGAGGCGGCGTTGTTTTGGGCTCTGTTATACCGTGCGTTCTTTTCTACTTTCTTCAACTCTACTTGAAACGAAATCGGTCAGACCAGACCCGGGACTCTCCGCCGTCGCCGGAGGCGGATTGTTCAGGGAATTCATCGCTGTCGTCGAGTAATCAGTTAGTGGAGTTCTCTGTGCTGCCTCGAACATCGTCTCGGACCTTCCTCTCGCCGAGGTCGAGCGGGCATGTTTGCGTTTCGGGTCGGGCTAATTCGATTGCTAGAATTGGGGATTCTTCGATGTTCGTTGGAATGAGGAGGTTCCTGGAGGACTCATTTGACGAATTCGATAATCCGACAGGGATTATTCAGCTATCTGTTGCTGAGAATAAGTTATCCTCCGACTTGGTGCAAAATTGGCTGACGGAGAATGGAAGGGATGCTATATTTGGAGGAGGGAATCATAATGAGCTGAGTGTAGCTGGGACTGTTCGTTACCAGCCTTCAGATGGATTGCCGGATTTGAAACTGGCTGTGGCAAGTTTCATGTCTCAAGTTGTAGGGAACTCTGTCTCATTCATCCCTTCACAATTAGTATTAACAACTGGAGTGACCTCTGCAATTGAAACACTTTGCTTTTGCATAGCTGACCCAGGACAAGCGTTTCTCGTTCCAACGCCATATTACCCGGGTCTCGACAACGATGTAAAGTGTCGAACTGGGGTGGAGATAGTACCAGTTCTGTGTCGCAGTACCGATAACTTCAGTTTAAGCACAACTTCTCTTGATCGAGCGTTCCACCAGGCAAGGAATCGCGGCCTTAAAGTTCGTGGAATTATAATCTCAAATCCTTCAATTCCAGTTGGAAACCAGCTACCAAGAGAAACACTCTACAACCTTTTGGAGTTTGCCAGGGAGAAAAACATCCATATAATATCAAATGAAACACTTGTAGGATCAAGTTATGGAAGTGAAGAATTCGTGAGCATGGCTGAAATGATCGACTTAGACGATAGCGATCAAGATCGAGTACATATTACATATGATCTATCCGAAGACATGTCACTTCCTGGTTTCAGAGTTGCTGCAATCTACTCTTCGAACGAAAATATCCTGGCTGCTGCTCGAAAACTGGCAAGGTTCTCATCTGTTTCTTCCATAACCCAGAACCTCCTTTCTTCTATGCTCTCAGATAAGCAATTCATCCAGAGGTTCATTCGGATCAGTCGAGAGAGGCTTGGAGAAACGAATCGTAAATTTGCTGCAGGGCTGAAGGAACTCGACATCAAATGTATCAAGAGCAATGGAGGTTTCTACTGCTGGGCAGATATGAGCAAGCTAATCGGCTCGTACAGCGAGAAAGGCGAACTTGAGCTCTGGGAAAAGCTGTTGGATATAGGTAAAGTTAATCTTACCCCTGGCTCTAGCTGTAGTTGTATTGAACCAGGATGGTTTGGATTCTGTTTTACAACTTTGATTGATAACGAAATACCTATCGTTATGGACCGAATTCGAAAAATTTCCGAAGCTTGTAAATCTTATACTTGA 1650 45.82 MTQSRLFRTRNSKPDEEAEPATSCGGRAAMRVVVPLQSVVQGRGGVVLGSVIPCVLFYFLQLYLKRNRSDQTRDSPPSPEADCSGNSSLSSSNQLVEFSVLPRTSSRTFLSPRSSGHVCVSGRANSIARIGDSSMFVGMRRFLEDSFDEFDNPTGIIQLSVAENKLSSDLVQNWLTENGRDAIFGGGNHNELSVAGTVRYQPSDGLPDLKLAVASFMSQVVGNSVSFIPSQLVLTTGVTSAIETLCFCIADPGQAFLVPTPYYPGLDNDVKCRTGVEIVPVLCRSTDNFSLSTTSLDRAFHQARNRGLKVRGIIISNPSIPVGNQLPRETLYNLLEFAREKNIHIISNETLVGSSYGSEEFVSMAEMIDLDDSDQDRVHITYDLSEDMSLPGFRVAAIYSSNENILAAARKLARFSSVSSITQNLLSSMLSDKQFIQRFIRISRERLGETNRKFAAGLKELDIKCIKSNGGFYCWADMSKLIGSYSEKGELELWEKLLDIGKVNLTPGSSCSCIEPGWFGFCFTTLIDNEIPIVMDRIRKISEACKSYT 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1511566 1515480 + Cp4.1LG13g01900.1 Cpe13g00195 479393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00195 549 PANTHER AMINOTRANSFERASE ACS12-RELATED 20 545 - -
Cpe13g00195 549 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 20 545 - -
Cpe13g00195 549 SUPERFAMILY PLP-dependent transferases 131 541 IPR015424 -
Cpe13g00195 549 Gene3D Aspartate Aminotransferase, domain 1 145 537 IPR015422 GO:0003824
Cpe13g00195 549 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 159 185 - -
Cpe13g00195 549 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 231 251 - -
Cpe13g00195 549 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 253 274 - -
Cpe13g00195 549 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 307 331 - -
Cpe13g00195 549 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 343 366 - -
Cpe13g00195 549 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 377 401 - -
Cpe13g00195 549 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 409 432 - -
Cpe13g00195 549 MobiDBLite consensus disorder prediction 69 90 - -
Cpe13g00195 549 Gene3D - 179 432 IPR015421 GO:0003824
Cpe13g00195 549 MobiDBLite consensus disorder prediction 1 23 - -
Cpe13g00195 549 Pfam Aminotransferase class I and II 163 538 IPR004839 GO:0009058|GO:0030170
Cpe13g00195 549 MobiDBLite consensus disorder prediction 76 90 - -
Cpe13g00195 549 CDD AAT_like 195 540 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe09g00132 Cpe13g00195 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00195 Cpe-Chr13:1511566 Cpe10g00504 Cpe-Chr10:2963038 2.07E-124 dispersed
Cpe13g00195 Cpe-Chr13:1511566 Cpe05g00272 Cpe-Chr5:1521007 0 wgd
Cpe13g00195 Cpe-Chr13:1511566 Cpe09g00132 Cpe-Chr9:780925 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00195 K14270 - csv:101208573 934.095