Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00198 ATGGCCGCTTCTGGGGGTACTAGTAATAGAAATGGCGCCAATTCCAGAAACTCTCTTAAGCTCGATAAGCCCTTTTCTCCTAATTCCAACCCCAATTCTTCTCTTAAGTCAAAGTCTCTTCCCAATTCTGCTCTGAGACGCAGTAGCCCTGCATCTCTTGGTGCTGCCAAGAATGACGGTGGAGTTCCTGGAAGAGTTCGAGTAGCTGTTAGATTGCGACCACGCAATTCAGAAGAATTGATAGCTGATGCTGATTTTGCTGATTGCGTAGAATTACAGCCAGAGCTTAAAAGGTTGAAACTCCTGAAGAACAACTGGGATTCAGATACTTATGAGTTTGATGAAGTGCTAACTGAGTTTGCATCTCAAAAACGTGTTTATGAAGCCGTGGTGAAGCCTGTTGTGGAGAGTGTATTGGATGGCTACAATGGAACAATTATGGCATATGGACAGACTGGTACCGGTAAAACGTATACTCTTGGAGGACTTGGAGAGGAAGACACGGCTGATCGTGGAATAATGGTGCGTGCTATGGAGGACATCTTGGCTGAAGTTTCTTTGGAGACGGATTCTGTCACGATCCTAAAAGGAGATGTTTCGTTACCTGGGGCTAGCCTTGTAGAAATTAGACACCAGGAGAGCTTTGTGGAACTACTAAGATTGGGGGAAGCTCATCGTTTTGCTGCGAATACGAAACTAAACACCGAATCTTCTCGTAGTCATGCAATTCTCCTGATTTACATTGTCTTTCAACATTTTCATAAGAAAAGTTGCTTTCTCAATGATATCAATGTGTTTATTGAGGCAGGAAGTGAAGGACATACACTTGAAGAAGCCAAATCCATAAATCTCTCCCTGAGTGCTTTAGGGAAGTGCATAAATGCACTAGCCGAGAATAGTGCACACGTTCCAGTTAGGGATTCAAAGCTTACAAGGTTACTCCGGGATTCATTTGGTGGAACAGCTAGAACTTCACTGGTTATTACTATTGGTCCATCACCTCGCCATCGTGGAGAGACTACAAGCACAATAATGTTTGGCCAACGGGCTATGAAGGTGGAAAATATGGTGAAGATAAAAGAAGAATTTGATTATAAAAGTTTATCAAGAAGATTAGACATTCAATTAGACAAACTGATAGCCGAACATGAAAGACAGAAGAAATCATTTGAGATGGAAATTGGAAGAATTACCAAAGAAGCACAGGATCGCATATCTGAAGCTGAAAGAAGTCATTCGAATGCACTGGAGGGTTCGGTTGAGTGTGCTGATAAGGAAGTTGAGGAGCTAAAGAATTTGGTTAAAAAGGAAACGCTTTTGAGGAAGGCAGCTGAAGAGGAAGTTAGCAATCTAAGAACTCAAGTAGCCCAACTGAAGAGATCAGAGACATCTTGCAATTTGGAAATCTCTAAGCTTTGCAAGTCTCTGGAAGATGAGCAAAATCAGAAAAAGAAACTAGAAGGAGATATAGCTGTTCTACAAACCCAGTTGTTGCAATTGAGCTTTGAAGCTGATGAGACCAGTAGGCGACTGGACAGAGGTGAGCCTGGGAAAGTCCTCGGTTCTATAGATTCTCTCGTGCAACAAAAGATCTTGTCGTTGCTGGAAGCTGAAGATTATGACGTCAGAATTCATGCTGTGAAAGTGGTTGCAAATCTAGCAGCTGAAGAAACAAATCAGCAAAAGATTGTAGAGGTTGGCGGCCTTTCATCCTTGCTGATGCTACTCAGAAACACAGAGGATGAGACGATACACAGAGTTGCTGCTGGGGCAATTGCAAATCTGGCAATGAATGAGACCAACCAAGAGCTGATTATGTCCCAAGGGGGCATTAGCTTACTGTCCATGACGGCTGCCAACGCTGAGGATCCCCAAACCCTTCGTATGGTTGCCGGAGCAATCGCCAATTTGTGCGGCAATGATAAGTTGCAGAAGAAGTTAAGGGGCGAAGGTGGTATCAAGGCATTGCTTGGGAGCAAGGCTGGAAAGTCTTTCTTGATTGAAGATGGAGCACTCCCATGGATTGTACAGAATGCCAACAATGAAGCATCAACGATCAAACGACATATCGAACTGGCACTCTGTCATTTAGCACAACATGAAGTGAATGCAAGGGACATGATGAATGGAGGTGCAGTGTGGGAACTGGTTCGGATATCGCGGGACTGCTCACGGGAAGACATAAGGAGTCTTGCGCATCGAACATTAATATCCAGCCCCACATTTCAAGCTGAAATGAGACGATTACGAATAGAATAG 2259 43.69 MAASGGTSNRNGANSRNSLKLDKPFSPNSNPNSSLKSKSLPNSALRRSSPASLGAAKNDGGVPGRVRVAVRLRPRNSEELIADADFADCVELQPELKRLKLLKNNWDSDTYEFDEVLTEFASQKRVYEAVVKPVVESVLDGYNGTIMAYGQTGTGKTYTLGGLGEEDTADRGIMVRAMEDILAEVSLETDSVTILKGDVSLPGASLVEIRHQESFVELLRLGEAHRFAANTKLNTESSRSHAILLIYIVFQHFHKKSCFLNDINVFIEAGSEGHTLEEAKSINLSLSALGKCINALAENSAHVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGETTSTIMFGQRAMKVENMVKIKEEFDYKSLSRRLDIQLDKLIAEHERQKKSFEMEIGRITKEAQDRISEAERSHSNALEGSVECADKEVEELKNLVKKETLLRKAAEEEVSNLRTQVAQLKRSETSCNLEISKLCKSLEDEQNQKKKLEGDIAVLQTQLLQLSFEADETSRRLDRGEPGKVLGSIDSLVQQKILSLLEAEDYDVRIHAVKVVANLAAEETNQQKIVEVGGLSSLLMLLRNTEDETIHRVAAGAIANLAMNETNQELIMSQGGISLLSMTAANAEDPQTLRMVAGAIANLCGNDKLQKKLRGEGGIKALLGSKAGKSFLIEDGALPWIVQNANNEASTIKRHIELALCHLAQHEVNARDMMNGGAVWELVRISRDCSREDIRSLAHRTLISSPTFQAEMRRLRIE 752
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1523221 1531524 + Cp4.1LG13g01940.1 Cpe13g00198 479396

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00198 752 PANTHER KINESIN-LIKE PROTEIN KIN-UA 47 194 IPR033291 GO:0008017|GO:0032886|GO:0048364
Cpe13g00198 752 Gene3D Kinesin motor domain 193 397 IPR036961 -
Cpe13g00198 752 PANTHER KINESIN-LIKE PROTEIN KIN-UA 673 745 IPR033291 GO:0008017|GO:0032886|GO:0048364
Cpe13g00198 752 PANTHER KINESIN-LIKE PROTEIN KIN-UA 424 529 IPR033291 GO:0008017|GO:0032886|GO:0048364
Cpe13g00198 752 PANTHER KINESIN-LIKE PROTEIN KIN-UA 529 653 IPR033291 GO:0008017|GO:0032886|GO:0048364
Cpe13g00198 752 PANTHER KINESIN-LIKE PROTEIN KIN-UA 196 253 IPR033291 GO:0008017|GO:0032886|GO:0048364
Cpe13g00198 752 PANTHER KINESIN-LIKE PROTEIN KIN-UA 269 418 IPR033291 GO:0008017|GO:0032886|GO:0048364
Cpe13g00198 752 PANTHER KINESIN-RELATED 673 745 IPR027640 GO:0003777|GO:0007018
Cpe13g00198 752 PANTHER KINESIN-RELATED 529 653 IPR027640 GO:0003777|GO:0007018
Cpe13g00198 752 PANTHER KINESIN-RELATED 47 194 IPR027640 GO:0003777|GO:0007018
Cpe13g00198 752 Pfam Armadillo/beta-catenin-like repeat 559 596 IPR000225 GO:0005515
Cpe13g00198 752 Gene3D - 460 617 IPR011989 -
Cpe13g00198 752 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 567 610 IPR000225 GO:0005515
Cpe13g00198 752 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 65 390 IPR027417 -
Cpe13g00198 752 MobiDBLite consensus disorder prediction 1 60 - -
Cpe13g00198 752 SMART kinesin_4 63 361 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cpe13g00198 752 Gene3D - 618 746 IPR011989 -
Cpe13g00198 752 Coils Coil 469 496 - -
Cpe13g00198 752 Pfam Kinesin motor domain 71 189 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cpe13g00198 752 Pfam Kinesin motor domain 199 353 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cpe13g00198 752 Gene3D Kinesin motor domain 59 192 IPR036961 -
Cpe13g00198 752 ProSiteProfiles Kinesin motor domain profile. 65 353 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cpe13g00198 752 PRINTS Kinesin heavy chain signature 231 248 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cpe13g00198 752 PRINTS Kinesin heavy chain signature 141 162 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cpe13g00198 752 PRINTS Kinesin heavy chain signature 303 324 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cpe13g00198 752 PANTHER KINESIN-RELATED 424 529 IPR027640 GO:0003777|GO:0007018
Cpe13g00198 752 PANTHER KINESIN-RELATED 196 253 IPR027640 GO:0003777|GO:0007018
Cpe13g00198 752 PANTHER KINESIN-RELATED 269 418 IPR027640 GO:0003777|GO:0007018
Cpe13g00198 752 Coils Coil 380 400 - -
Cpe13g00198 752 MobiDBLite consensus disorder prediction 1 49 - -
Cpe13g00198 752 SMART arm_5 598 639 IPR000225 GO:0005515
Cpe13g00198 752 SMART arm_5 555 597 IPR000225 GO:0005515
Cpe13g00198 752 SUPERFAMILY ARM repeat 529 736 IPR016024 -
Cpe13g00198 752 Coils Coil 413 461 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00198 - - K10396 csv:101209471 1150.96
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00198 Cpe-Chr13:1523221 Cpe13g00756 Cpe-Chr13:6912806 2.01E-77 dispersed
Cpe13g00198 Cpe-Chr13:1523221 Cpe03g01686 Cpe-Chr3:12839084 0 wgd
Cpe13g00198 Cpe-Chr13:1523221 Cpe05g00275 Cpe-Chr5:1532983 0 wgd
Cpe13g00198 Cpe-Chr13:1523221 Cpe08g00491 Cpe-Chr8:3167704 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g462 . . Bda06g00057 . . . Bma07g01621 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00360 . . . . . Bda09g00070 . . . . . . . . . . . . Cpe13g00198 Bhi12g00357 . . . . . Lcy12g1744 Cla01g00338 Cam01g0351 Cec01g0347 Cco01g0359 Clacu01g0355 Cmu01g0335 Cre09g2175 Lsi09g00364 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001054 3 5 3 2 3 2 5 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 5 2 3 80
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00198 Cpe_Chr13 FPKM 14.134821 16.019978 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0