Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00199 ATGGATGCTCACTCCCTTCCTCCTCCCTTCCACACCCGAGATTTCCATCTCCAGACTCCGTTTCACCATAACAACAACAACCACAACAACAACAATTCCGAAGAAGAACATAGCGCCACCACCAGCCGTCTCAAGCGTGATCGCGACGACGACCATCACCCCAACAACTCTGCCCCCAACAGCGGTGGAGATCCCGACGGAGAAATCACTCGTCGCCCTAGAGGCAGGCCTGCCGGATCCAAAAACAAACCCAAACCCCCTATTATCATTACTCGTGACAGTGCTAACGCCCTTCGGACCCATGTCATCGAGGTCACCGATGGCTGCGACATCGTCGACAGTGTTGCTACCTTCGCTCGCCGCCGACAACGTGGTGTTTGTATCATGAGCGGTACCGGCACCGTTACCAACGTCACTCTCCGCCAACCTGCCTCCCCCGGTGCAATTGTCAACTTACACGGTCGTTTCGAGATCTTGTCCCTAGCCGGGTCTTTCCTCCCTCCTCCGGCTCCTCCTGCCGCTACCACCTTAACCATTTACCTCGCCGGCGGCCAGGGTCAAGTCGTCGGCGGTAGCGTCGTCGGTACTTTAATCGCTTCTGGCCCTGTCGTCATCATGGCTGCCTCGTTTAGTAACGCCGCTTATGAACGGCTCCCGTTGGAGGAGGACGACCAGCCGCCACTTCCGTCGATGCAAGGCGGCGGCGGAATTGGGTCTCCCGATGAAATTGGACAGCCCCAACAACAGCAGCAACTCGTCGGCGACGGAAATGGGCCGTTGTTTCAAGGTTTGCCTCCGAATCTGCTAAATTCAATTCAAATGCCACCATCGGAAGCAGCTTATTGGGCAAATTCCNATAATGTCAGTTGA 870 55.86 MDAHSLPPPFHTRDFHLQTPFHHNNNNHNNNNSEEEHSATTSRLKRDRDDDHHPNNSAPNSGGDPDGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVIEVTDGCDIVDSVATFARRRQRGVCIMSGTGTVTNVTLRQPASPGAIVNLHGRFEILSLAGSFLPPPAPPAATTLTIYLAGGQGQVVGGSVVGTLIASGPVVIMAASFSNAAYERLPLEEDDQPPLPSMQGGGGIGSPDEIGQPQQQQQLVGDGNGPLFQGLPPNLLNSIQMPPSEAAYWANSXNVS 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1532186 1533055 - Cp4.1LG13g01990.1 Cpe13g00199 479397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00199 289 MobiDBLite consensus disorder prediction 19 37 - -
Cpe13g00199 289 CDD DUF296 99 165 IPR005175 -
Cpe13g00199 289 PIRSF ESCAROLA 11 288 IPR014476 GO:0003680
Cpe13g00199 289 MobiDBLite consensus disorder prediction 242 256 - -
Cpe13g00199 289 MobiDBLite consensus disorder prediction 38 55 - -
Cpe13g00199 289 SUPERFAMILY AF0104/ALDC/Ptd012-like 95 226 - -
Cpe13g00199 289 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 3 285 IPR014476 GO:0003680
Cpe13g00199 289 Pfam Plants and Prokaryotes Conserved (PCC) domain 99 212 IPR005175 -
Cpe13g00199 289 ProSiteProfiles PPC domain profile profile. 95 231 IPR005175 -
Cpe13g00199 289 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 24-RELATED 3 285 - -
Cpe13g00199 289 Gene3D - 98 228 - -
Cpe13g00199 289 MobiDBLite consensus disorder prediction 219 271 - -
Cpe13g00199 289 MobiDBLite consensus disorder prediction 1 93 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00278 Cpe-Chr5:1565555 Cpe13g00199 Cpe-Chr13:1532186 2.38E-142 dispersed
Cpe12g00023 Cpe-Chr12:113824 Cpe13g00199 Cpe-Chr13:1532186 1.36E-73 dispersed
Cpe13g00199 Cpe-Chr13:1532186 Cpe17g00317 Cpe-Chr17:2159794 2.73E-82 dispersed
Cpe13g00199 Cpe-Chr13:1532186 Cpe05g00276 Cpe-Chr5:1542453 5.09E-149 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00199 - - csv:101209716 444.121