Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00201 ATGGAGGGAAGGGACGGTGGTGCAAGTAGTGGGGTTACTGTAGTTGGATCAGATGCTCCGTCCAAGTACCAAATAGCTCCCAGGACCTCCGGTAGCCCACCGCAGAGCGGTGGATCAACGCTGCCACCGGCGACTCAACCAACTTCCACGCCGTCGGCCTCGGCGCAGGTACCTGCGCAGCCTACGCCACCCACGGCGGCCTCCTCTGTTCCGGGAAAGAAGAAAAGAGGGAGGCCGAGAAAATATGGACCCGATGGCTCTGTTAATATGGCTCTGTCTCCCAAGCCGATATCTTCGTCGGTGCCGCCGCCGGTGATTGACTTCTCGGCGGAGAAGAAGGGGAAAGTCCGGCCGGCGAGTGGTGTGAGCAAAACCAAATTCGAAGTGGATAATTTAGGCGATTGGGTGGTTCCATGTTCTGTTGGTGCAAATTTTACGCCTCATATCATCACTGTCGATGCGGGCGAGGTTGTAGTAGGGAGTTTTCTTTCTGGAAATCAACATGAGCAGAAACCTAAAAAGCCAAAACAAGATACTAATTCAACTGCTCCGCCAACTGCTGCCATTCCAATATCTTGCGTCGACCCTAAGTCGAACCTCTCGCCGTCCAGTCCCTTTCGTGGCGATAACTGGTCGACGCTGCCAACCGATTCGAGGAATAATAAGCCAACTGATATCAATGTATCCCTACCCAGTGCTTGA 702 53.7 MEGRDGGASSGVTVVGSDAPSKYQIAPRTSGSPPQSGGSTLPPATQPTSTPSASAQVPAQPTPPTAASSVPGKKKRGRPRKYGPDGSVNMALSPKPISSSVPPPVIDFSAEKKGKVRPASGVSKTKFEVDNLGDWVVPCSVGANFTPHIITVDAGEVVVGSFLSGNQHEQKPKKPKQDTNSTAPPTAAIPISCVDPKSNLSPSSPFRGDNWSTLPTDSRNNKPTDINVSLPSA 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1547397 1550251 + Cp4.1LG13g01930.1 Cpe13g00201 479399

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00201 233 MobiDBLite consensus disorder prediction 165 233 - -
Cpe13g00201 233 MobiDBLite consensus disorder prediction 196 233 - -
Cpe13g00201 233 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 156 231 - -
Cpe13g00201 233 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 9 158 - -
Cpe13g00201 233 MobiDBLite consensus disorder prediction 1 121 - -
Cpe13g00201 233 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 156 231 IPR039605 GO:0003680
Cpe13g00201 233 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 9 158 IPR039605 GO:0003680
Cpe13g00201 233 MobiDBLite consensus disorder prediction 23 67 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00201 - - - csv:101210208 215.312
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe13g00201 Cpe14g00855 CCT
Cpe13g00201 Cpe14g00855 ECH
Cpe08g00488 Cpe13g00201 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00201 Cpe-Chr13:1547397 Cpe05g00713 Cpe-Chr5:4376541 4.88E-16 dispersed
Cpe13g00201 Cpe-Chr13:1547397 Cpe14g00855 Cpe-Chr14:7073358 4.33E-55 wgd
Cpe13g00201 Cpe-Chr13:1547397 Cpe03g01680 Cpe-Chr3:12807604 6.14E-17 wgd
Cpe13g00201 Cpe-Chr13:1547397 Cpe05g00281 Cpe-Chr5:1584860 8.77E-126 wgd
Cpe13g00201 Cpe-Chr13:1547397 Cpe08g00773 Cpe-Chr8:6170305 2.62E-49 wgd
Cpe13g00201 Cpe-Chr13:1547397 Cpe08g00488 Cpe-Chr8:3132250 1.78E-25 wgd
Cpe13g00201 Cpe-Chr13:1547397 Cpe09g00137 Cpe-Chr9:808107 3.55E-24 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g468 . . Bda06g00054 . . Bpe07g00145 . Bma14g00567 Cmo06g01158 Cmo16g01081 . Cma15g01173 . Car15g01061 . Cpe14g00855 . . . . . . . . . . . . . . . Cone8ag0357 Cone12ag0349 Cone6ag0720 Cone9ag0724 . Csa05g00365 Chy09g01143 . Blo03g00386 . Bda07g00515 . . Bpe11g00702 . . . . Cmo15g01234 Cma06g01133 Cma16g01035 Car06g00971 Car16g00986 Cpe08g00488 Cpe13g00201 Bhi12g00573 . . . Hepe06g1336 . . Cla01g00342 Cam01g0355 Cec01g0352 Cco01g0365 Clacu01g0359 Cmu01g0339 Cre09g2170 Lsi09g00368 . . Cme09g01675
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001610 2 2 1 2 2 2 4 2 2 2 2 2 3 2 2 4 2 4 4 2 3 2 2 2 3 2 2 3 3 1 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00201 Cpe_Chr13 FPKM 5.413793 6.028765 38.123737 36.460457 239.631958 227.932007 237.533188 17.842171 19.032 16.80134