Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00206 ATGGCCTCAACCCCCTCAAACTCTGTTCAATCGGGTCGGATTCGGGTTTTGAAAGATGTAACGGGTTCTCTCGATCGACCTGTGGGTCCGGTGGTTTATTGGATGTTTAGGGATCAAAGGGTGAAAGACAATTGGGCGTTGATGCACGCCGTTGATGAAGCCAACAGAGCCAAAGTTCCTGTTGCTGTTGCCTTCAATTTGTTCGATCAATTTTTGGGGGCAAAATCTCGGCAGTTAGGGTTTATGCTTAGAGGTCTGCAACAACTTCAGTATGATCTCGAAGAAACACTTCAAATCCCTTTCTTCTTGTTCCAGGGGGAAGCTGAACATACTATACCAAATTTCATTAGAGAATGTGAGGCTTCACTACTGGTTACAGACTTCTCGCCGTTACGAGAAGTTCGAAAGTGTAAAGAGGAAATTTGTAAGAGGGTAGATGAATCAGTTAAAGTTCATGAAGTTGATGCACACAATGTGGTACCCATTTGGATTGCGTCTGAGAAATTGGAGTATAGTGCAAAAACTTTAAGGGGCAAGATAAATAAAAAGCTCCCGGAATACCTTATTGACTTCCCTGCTCTGCTTATACCAACTAGAAAATGGCCTTCCACTCATAAGTTTATTGATTGGGACAGACTTATTGATGATAACATGAGGAAAGGAGCAGATGTTCCTGAAATTGAATGGTGTAAACCAGGGGAAAAGGCTGCAATGGAAGTATTGATGGGCAGGAAAGATGGGTTTTTGACTAAGAGGTTGAAGAGCTATGCAATAGATAGAAACAATCCATTGAAACCTAGGGGGCTCTCTGGCCTCTCCCCATATTTGCATTTTGGTCAAATATCCGCACAACGCTGTGCCTTAGAAGCTCGTAATGTTCGTAAACTCAATCCACAGGCCGTTGATATGTTTCTCGAGGAGTTGATTGTTAGAAGGGAACTTGCTGATAATTACTGCTACTACCAACCGAACTATGATTCACTGCTCGGGGCTTGGGAATGGGCACGTAAAACCTTGATGGATCACGCTTCCGATAAGCGAGAACATGTTTACACGAGGGAGCAACTGGAGAAGGCGCAGACTGCTGACCCAGTTACTCTGGAATGCTTCTCAGTTGGAGATGGTCTTCCATGGAAAGATGCATGGTTTTATGAGGCAATCCTGGAATGTCATATAGTGAAATTCATGCACAGGATGTACTGGGCCAAAAAGATTTTGGAGTGGACAAGAGGACCTGAGGAAGCCCTGGAAATTTGCATATACTTGAATGACAAGGTATATTGTTTCCAGTCTACACTTTTATGTGCTTCTATTGAAGTGGTGAAAATTGCTAATCAAGAACGCGGCGTGCAGTATGAAATTGATGGGAGGGATCCAAATGGATACGTCGGGTGCATGTGGTCGATCTGTGGCGTTCACGACCAGGGCTGGAAAGAGCGACCCATATTTGGGAAGATACGATACATGAACTTCGCTGGGTGCAAGAGGAAATTCGATGTGGATGGCTACATTGCTTATGTGAAGAGAGTTGTGGGTGAAGTGAAGAAAAGAAAAGCAGGGGAGGTTGTGGTGGATAGAAAGGCAAAGGAACTCCGATGCTAG 1602 44.26 MASTPSNSVQSGRIRVLKDVTGSLDRPVGPVVYWMFRDQRVKDNWALMHAVDEANRAKVPVAVAFNLFDQFLGAKSRQLGFMLRGLQQLQYDLEETLQIPFFLFQGEAEHTIPNFIRECEASLLVTDFSPLREVRKCKEEICKRVDESVKVHEVDAHNVVPIWIASEKLEYSAKTLRGKINKKLPEYLIDFPALLIPTRKWPSTHKFIDWDRLIDDNMRKGADVPEIEWCKPGEKAAMEVLMGRKDGFLTKRLKSYAIDRNNPLKPRGLSGLSPYLHFGQISAQRCALEARNVRKLNPQAVDMFLEELIVRRELADNYCYYQPNYDSLLGAWEWARKTLMDHASDKREHVYTREQLEKAQTADPVTLECFSVGDGLPWKDAWFYEAILECHIVKFMHRMYWAKKILEWTRGPEEALEICIYLNDKVYCFQSTLLCASIEVVKIANQERGVQYEIDGRDPNGYVGCMWSICGVHDQGWKERPIFGKIRYMNFAGCKRKFDVDGYIAYVKRVVGEVKKRKAGEVVVDRKAKELRC 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1576254 1579723 + Cp4.1LG13g01920.1 Cpe13g00206 479404

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00206 533 Gene3D HUPs 7 156 IPR014729 -
Cpe13g00206 533 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 30 214 IPR036155 -
Cpe13g00206 533 Gene3D - 157 327 - -
Cpe13g00206 533 Pfam DNA photolyase 31 193 IPR006050 -
Cpe13g00206 533 ProSitePatterns DNA photolyases class 2 signature 2. 471 490 IPR032673 -
Cpe13g00206 533 PANTHER DEOXYRIBODIPYRIMIDINE PHOTOLYASE 451 530 - -
Cpe13g00206 533 PANTHER DEOXYRIBODIPYRIMIDINE PHOTOLYASE 7 425 - -
Cpe13g00206 533 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 328 518 - -
Cpe13g00206 533 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 219 515 IPR036134 -
Cpe13g00206 533 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 29 162 IPR006050 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00206 K01669 phr, PHR1; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] - csv:101211446 854.358
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00206 Cpe-Chr13:1576254 Cpe05g00284 Cpe-Chr5:1608126 7.17E-56 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g476 . . . . . . . Bma14g00015 . . . . Car02g01268 . . . . . . . . . . . . . . . . . . . . Cone6ag0716 Cone9ag0717 . Csa05g00371 . . Blo03g00391 . . . . Bpe11g00249 . . . Cmo02g01547 . . . . . . Cpe13g00206 Bhi12g00370 . . Lac11g2214 Hepe06g1631 . Lcy12g1755 Cla01g00346 Cam01g0362 Cec01g0358 Cco01g0371 Clacu01g0365 Cmu01g0345 Cre09g2164 Lsi09g00373 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012469 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29