Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00219 ATGTCCATTGCAACATTTGTGACACTGTCCTTGCGTTCTAATCTTTTTGTGATTCCTTCTTCTGGGTTTTGGTTTTTGGTCAATTTTGAGGTCAGTGTTCCTTGTTCTAGCTTGTTCAAAACTGTGACAGTGCGATGTGGACACTGCACCAATCTGCTGCCTGTCAACATGCGTGGCCTGCTCCTCCCTTCACCTAATCAATTTCATCACCTTGGCCACTCCCATAACATTCTGGAAAACATCCCCACTCCAAACCCCAATTATCTGATCAACCAGTTTGCAGCCACCAACAATTTTGTAACGCCATCTCGTGGAGTCATTGATGAGCTCCCCAGGCCCCCTGTCATCAACAGACCTCCAGAGAAGCGACAGAGAGTGCCATCTGCATACAATCGCTTCATCAAGGACGAGATCCAACGCATCAAGTCAGTGAATCCCGATATATCCCATAGAGAAGCCTTCAGCGCCGCTGCTAAGAATTGGGCCCACTTTCCACACATTCACTTTGGTCTCATGCCCGACCAGAAAGTGAAGAAAACAAACATCCGCCAGCAGGAAGCAGAGCAGAGTGTTTTAATGAAAGACAATGGAGGATTCTATGCCTCAGCAGCAGCCAACGTTGGTGTCTCTCATTTCTAG 639 47.42 MSIATFVTLSLRSNLFVIPSSGFWFLVNFEVSVPCSSLFKTVTVRCGHCTNLLPVNMRGLLLPSPNQFHHLGHSHNILENIPTPNPNYLINQFAATNNFVTPSRGVIDELPRPPVINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHIHFGLMPDQKVKKTNIRQQEAEQSVLMKDNGGFYASAAANVGVSHF 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1656187 1659056 + Cp4.1LG13g02080.1 Cpe13g00219 479417

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00219 212 SUPERFAMILY HMG-box 115 165 IPR036910 -
Cpe13g00219 212 Pfam YABBY protein 30 171 IPR006780 GO:0007275
Cpe13g00219 212 PANTHER PROTEIN YABBY 6-RELATED 30 210 IPR006780 GO:0007275
Cpe13g00219 212 PANTHER AXIAL REGULATOR YABBY 3 30 210 - -
Cpe13g00219 212 Gene3D High mobility group box domain 116 196 IPR036910 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00219 K25796 YAB; plant-specific transcription factor YABBY family protein - csv:101214748 320.472
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe08g00754 Cpe13g00219 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00237 Cpe-Chr5:1340984 Cpe13g00219 Cpe-Chr13:1656187 2.56E-81 dispersed
Cpe11g01064 Cpe-Chr11:8932872 Cpe13g00219 Cpe-Chr13:1656187 3.65E-43 dispersed
Cpe13g00219 Cpe-Chr13:1656187 Cpe18g00498 Cpe-Chr18:5778295 9.28E-33 dispersed
Cpe13g00219 Cpe-Chr13:1656187 Cpe05g00236 Cpe-Chr5:1339016 5.07E-64 wgd
Cpe13g00219 Cpe-Chr13:1656187 Cpe08g00754 Cpe-Chr8:6069752 4.06E-61 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g495 Blo02g01054 . Bda06g00039 Bda08g00564 Bpe05g00592 Bpe07g00159 . Bma14g00033 Cmo06g00784 . . Cma15g01149 . Car15g01044 . . . . . . . . . . Cla10g00285 Cam10g0296 Cec10g0303 Cco10g0299 Clacu10g0295 Cmu10g1134 Cre10g0542 . . Cone6ag0698 Cone9ag0698 Lsi07g01331 Csa05g00395 Chy09g01118 Cme06g02614 Blo03g00407 . Bda07g00010 . . Bpe11g00259 . . . . Cmo15g01209 Cma06g00763 . Car06g00681 . Cpe08g00754 Cpe13g00219 Bhi12g00406 . . . . . Lcy12g1797 Cla01g00368 Cam01g0388 Cec01g0381 Cco01g0399 Clacu01g0387 Cmu01g0368 Cre09g2142 Lsi09g00397 Csa03g00304 Chy06g02018 Cme09g01648
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe05g00237 . 209 369 C2C2-YABBY Transcription Factor Family AT2G45190 59.5 1.6e-43 172.9
Cpe13g00219 CST 57 212 C2C2-YABBY Transcription Factor Family AT2G45190 56.8 5.3e-42 167.9
Cpe05g00455 . 1 166 C2C2-YABBY Transcription Factor Family AT1G08465 66.5 6.7e-54 207.6
Cpe08g00754 CST 14 183 C2C2-YABBY Transcription Factor Family AT1G08465 52.8 9.7e-37 150.6
Cpe13g00219 CST 27 211 C2C2-YABBY Transcription Factor Family AT4G00180 55.5 5.1e-50 194.9
Cpe05g00237 . 182 368 C2C2-YABBY Transcription Factor Family AT4G00180 57.7 6.7e-50 194.5
Cpe01g01541 . 1 160 C2C2-YABBY Transcription Factor Family AT1G23420 52.6 1.2e-37 154.1
Cpe11g01064 . 8 175 C2C2-YABBY Transcription Factor Family AT2G26580 72.0 1.0e-61 233.4
Cpe07g01105 . 12 172 C2C2-YABBY Transcription Factor Family AT2G26580 69.1 1.7e-56 216.1
Cpe18g00498 . 7 158 C2C2-YABBY Transcription Factor Family AT2G26580 68.4 1.6e-51 199.5
Cpe04g01191 . 7 156 C2C2-YABBY Transcription Factor Family AT2G26580 60.7 3.7e-48 188.3
Cpe05g00455 . 1 166 C2C2-YABBY Transcription Factor Family AT2G26580 59.0 6.4e-48 187.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001283 4 1 4 3 5 2 3 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 2 2 2 2 2 4 2 2 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50386 PF04690 YABBY 5.50E-57 CL0114 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00219 Cpe_Chr13 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0