Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00219 ATGTCCATTGCAACATTTGTGACACTGTCCTTGCGTTCTAATCTTTTTGTGATTCCTTCTTCTGGGTTTTGGTTTTTGGTCAATTTTGAGGTCAGTGTTCCTTGTTCTAGCTTGTTCAAAACTGTGACAGTGCGATGTGGACACTGCACCAATCTGCTGCCTGTCAACATGCGTGGCCTGCTCCTCCCTTCACCTAATCAATTTCATCACCTTGGCCACTCCCATAACATTCTGGAAAACATCCCCACTCCAAACCCCAATTATCTGATCAACCAGTTTGCAGCCACCAACAATTTTGTAACGCCATCTCGTGGAGTCATTGATGAGCTCCCCAGGCCCCCTGTCATCAACAGACCTCCAGAGAAGCGACAGAGAGTGCCATCTGCATACAATCGCTTCATCAAGGACGAGATCCAACGCATCAAGTCAGTGAATCCCGATATATCCCATAGAGAAGCCTTCAGCGCCGCTGCTAAGAATTGGGCCCACTTTCCACACATTCACTTTGGTCTCATGCCCGACCAGAAAGTGAAGAAAACAAACATCCGCCAGCAGGAAGCAGAGCAGAGTGTTTTAATGAAAGACAATGGAGGATTCTATGCCTCAGCAGCAGCCAACGTTGGTGTCTCTCATTTCTAG 639 47.42 MSIATFVTLSLRSNLFVIPSSGFWFLVNFEVSVPCSSLFKTVTVRCGHCTNLLPVNMRGLLLPSPNQFHHLGHSHNILENIPTPNPNYLINQFAATNNFVTPSRGVIDELPRPPVINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHIHFGLMPDQKVKKTNIRQQEAEQSVLMKDNGGFYASAAANVGVSHF 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1656187 1659056 + Cp4.1LG13g02080.1 Cpe13g00219 479417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00219 212 SUPERFAMILY HMG-box 115 165 IPR036910 -
Cpe13g00219 212 Pfam YABBY protein 30 171 IPR006780 GO:0007275
Cpe13g00219 212 PANTHER PROTEIN YABBY 6-RELATED 30 210 IPR006780 GO:0007275
Cpe13g00219 212 PANTHER AXIAL REGULATOR YABBY 3 30 210 - -
Cpe13g00219 212 Gene3D High mobility group box domain 116 196 IPR036910 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe08g00754 Cpe13g00219 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00237 Cpe-Chr5:1340984 Cpe13g00219 Cpe-Chr13:1656187 2.56E-81 dispersed
Cpe11g01064 Cpe-Chr11:8932872 Cpe13g00219 Cpe-Chr13:1656187 3.65E-43 dispersed
Cpe13g00219 Cpe-Chr13:1656187 Cpe18g00498 Cpe-Chr18:5778295 9.28E-33 dispersed
Cpe13g00219 Cpe-Chr13:1656187 Cpe05g00236 Cpe-Chr5:1339016 5.07E-64 wgd
Cpe13g00219 Cpe-Chr13:1656187 Cpe08g00754 Cpe-Chr8:6069752 4.06E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50386 PF04690 YABBY 5.50E-57 CL0114 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00219 K25796 - csv:101214748 320.472