Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00220 ATGGCTCCCATTCGTAACTTATTCTTCATCTTTCTTCTTCCTATTTGCCTGTTTGTAACCCTTTCCTCGGCTGCAGATCCGTTTGCTTTCTTTAATTTTGAAGTCTCCTACATCACTGCTTCTCCTCTGGGTGTTCCTCAACAGCGGAGAAGTTCATGGCAAGATGGTGTTCTTGGAACTAATTGTCCAATTCCTCCCAAGTGGAACTGGACTTACCAGTTTCAAGTTAAGGATCAGATAGGGAGCTTCTTTTACTTTCCATCGCTCCATTTCCAGAGAGCGTCGGGTGGATTCGGTGGCATTATTATTAACAACAGACCTATAATCCCCATTCCTTTTGCTACCCCAGATGGAGACATTGTAATTTTGATTGGTGATTGGTACACCAGGAATCACACGGCTTTGAGAAAAACCCTTGATGATGGGAAGGATCTTGGAATGCCACATGGTGTTCTCATCAATGGAAAAGGCCCTTACAGATATAACGACACGCTAGTCCCTGATGGTATCGAACACGAAACAATTGAAGTTCATCCAGGGAAGACGTACCGGATTCGCGTGCACAATGTTGGAATATCTACTAGTCTGAATTTCAGGATACAAAACCACAATCTTCTATTAGCAGAAACAGAGGGGTCATATACAGTGCAACAGAATTATACTAGCTTAGATATACATGTAGGACAGTCATATTCATTTTTGGTAACCATGGATCAGAACGCGAGCACTGATTATTACATTGTAGCTAGTGCTCGGTTTGTCAACGAGTCTCTTTGGAAAAGAGTTACCGGTGTTGCTATCTTGCATTACTCTAATTCCAAAGGAAAGGCAGCTGGTCCCCTTCCGGAAGCACCAAATGATGAATTTGATAAAACTTTCTCAATGAACCAGGCAAGATCAATCAGATGGAATGTATCCGCAAGTGGTGCTCGTCCCAATCCTCAAGGATCATTCAGATATGGCTCGATTAATGTTACCGATGTTTACGTCTTGCAAAATAAACCTCCTGTGTCGATCAGTGGCAAACAGAGAACAACGCTAAATGGAATCTCGTTTGTCAATCCATCCACACCAATCAGATTGGCTGACCAATTCAAGTTAAAGGGTGTTTATAAGCTCGACTTTCCCACTAGGCCACTTACAGGACCACCAAAGACAGAGACATCAGTGATTAATGGAACCTATAGAGGGTTTATGGAGATTGTACTGCAGAATAACGACACCAAGATGCAGAGCTATCACATGAACGGATACGCCTTCTTTGTCGTGGGGATGGACTATGGCGAGTGGACTGAGAATAGCAGGGGCACATACAATAAATGGGATGGAATAGCTCGCTCAACAATTCAGGTTTATCCGGGAGCATGGACAGCCATCTTGATATCTCTCGACAATGTCGGAGTTTGGAACATCAGGACAGAAAATCTCGACTCATGGTATCTTGGGCAAGAGACATACGTTCGGGTTGTCAATCCTGAGGCGACTAACAAAACTGAACTGCCTATGCCAGACAATGCACTGTTTTGTGGTCAGCTTGGTAAATTACAGAAGCCACAAGATATCTCTTCTGCAACACCAATCATGGGCGGTAAATTGACGATGCTATTCACTCTGCTGACAATCTTCTCCACTGTAATATCTGCTTTGCGCTAA 1653 43.44 MAPIRNLFFIFLLPICLFVTLSSAADPFAFFNFEVSYITASPLGVPQQRRSSWQDGVLGTNCPIPPKWNWTYQFQVKDQIGSFFYFPSLHFQRASGGFGGIIINNRPIIPIPFATPDGDIVILIGDWYTRNHTALRKTLDDGKDLGMPHGVLINGKGPYRYNDTLVPDGIEHETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQQNYTSLDIHVGQSYSFLVTMDQNASTDYYIVASARFVNESLWKRVTGVAILHYSNSKGKAAGPLPEAPNDEFDKTFSMNQARSIRWNVSASGARPNPQGSFRYGSINVTDVYVLQNKPPVSISGKQRTTLNGISFVNPSTPIRLADQFKLKGVYKLDFPTRPLTGPPKTETSVINGTYRGFMEIVLQNNDTKMQSYHMNGYAFFVVGMDYGEWTENSRGTYNKWDGIARSTIQVYPGAWTAILISLDNVGVWNIRTENLDSWYLGQETYVRVVNPEATNKTELPMPDNALFCGQLGKLQKPQDISSATPIMGGKLTMLFTLLTIFSTVISALR 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1663321 1668305 - Cp4.1LG13g02170.1 Cpe13g00220 479418

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00220 550 Gene3D - 38 105 IPR008972 -
Cpe13g00220 550 SUPERFAMILY Cupredoxins 113 312 IPR008972 -
Cpe13g00220 550 Gene3D - 322 519 IPR008972 -
Cpe13g00220 550 Gene3D - 117 310 IPR008972 -
Cpe13g00220 550 PANTHER MONOCOPPER OXIDASE-LIKE PROTEIN SKS1 13 48 - -
Cpe13g00220 550 PANTHER MONOCOPPER OXIDASE-LIKE PROTEIN SKS1 47 521 - -
Cpe13g00220 550 Pfam Multicopper oxidase 47 106 IPR011707 GO:0005507
Cpe13g00220 550 Pfam Multicopper oxidase 359 492 IPR011706 GO:0005507|GO:0016491
Cpe13g00220 550 PANTHER MULTI-COPPER OXIDASE 13 48 IPR045087 -
Cpe13g00220 550 PANTHER MULTI-COPPER OXIDASE 47 521 IPR045087 -
Cpe13g00220 550 SUPERFAMILY Cupredoxins 339 511 IPR008972 -
Cpe13g00220 550 Pfam Multicopper oxidase 119 272 IPR001117 -
Cpe13g00220 550 SUPERFAMILY Cupredoxins 51 132 IPR008972 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00220 - - - csv:101214991 1021.54
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe13g00220 Cpe14g00160 CCT
Cpe05g00708 Cpe13g00220 CCT
Cpe13g00220 Cpe14g00160 ECH
Cpe05g00708 Cpe13g00220 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00722 Cpe-Chr4:7108615 Cpe13g00220 Cpe-Chr13:1663321 3.35E-40 dispersed
Cpe13g00034 Cpe-Chr13:274545 Cpe13g00220 Cpe-Chr13:1663321 0 dispersed
Cpe13g00220 Cpe-Chr13:1663321 Cpe18g00133 Cpe-Chr18:2883334 5.65E-47 dispersed
Cpe13g00220 Cpe-Chr13:1663321 Cpe14g00160 Cpe-Chr14:871135 0 wgd
Cpe13g00220 Cpe-Chr13:1663321 Cpe05g00238 Cpe-Chr5:1345780 5.72E-16 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g496 . . . . . . Bma07g01605 . . . . Cma15g01148 . Car15g01043 . . . . . . . . . . . . . . . . . . . . . . Csa05g00396 Chy09g01117 . . Blo19g00222 . Bda09g00089 Bpe08g01440 . . . . . Cmo15g01208 . . . . . Cpe13g00220 . . . . . . . Cla01g00369 Cam01g0389 Cec01g0382 Cco01g0400 Clacu01g0388 Cmu01g0369 Cre09g2141 Lsi09g00399 . . Cme09g01647
Vvi16g429 Blo06g01090 Blo15g00133 . . . Bpe07g00978 . . Cmo16g00204 . . Cma15g01148 . . Sed01g4020 Cpe05g00708 Cpe14g00160 Bhi01g01216 Tan01g0390 Cmetu06g0404 . Hepe07g0250 Mch10g0250 . Cla01g00369 Cam01g0389 Cec01g0382 Cco01g0400 Clacu01g0388 Cmu01g0369 Cre09g2141 . . . . Lsi05g01323 Csa05g00396 Chy09g01117 Cme06g00894 . . Bda06g00744 . . . . Bma12g01160 . . Cmo15g01208 Cma16g00190 . Car16g00167 . . Cpe13g00220 . . . . . . . Cla05g00795 Cam05g0872 Cec05g0877 Cco05g0882 Clacu05g0863 Cmu05g0819 Cre05g0905 . Csa03g01616 Chy06g00853 Cme09g01647
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000359 4 3 4 4 4 4 5 4 4 4 5 4 5 4 4 5 4 6 5 4 4 4 4 4 4 5 4 8 5 2 130
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00220 Cpe_Chr13 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0