Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00226 ATGAAGGTTAAGGAAATGCATCCTCTGTGCTGCATCTCGGTCGAAAGTTTTGGAATCGGATGTGGTGGCGATGGAGACAAGTCCAGAGACGAAGCTGCGGCGTTGCCTCTGTCTAGGACGAAGAGCATGCCGGCGAGTTTTGCGGCGTTTTCCGATGGATCTGATGGGAATGTTATCAGACGGCCACTTGGATCCAAATCCACAGTCGCTGGAGTTCTTCAGAAGTGGACCAATTACGGCAAGGGGTGGAGATCGAGGTGGTTTCTCCTCCGTAATGGGGTATTATCCTACGCGAAGATTCGCCGGCCGGAGAATCTGAACCTTCTTTCCCCCAACGACGACGTGCGATTGATCGGAGAGAGTTCGAGCAATCGGATTCCAAGGGGAGATGAGAAAGACAGAGGGAGGCAAAAGCAGCGGAAAGCGGTGGGAGTGGTTCATCTCAAGATCGGATCATTTCGAGAGAGCAAGTCGGATGATAGGAGGTTTTATATATCCACTGCTACGAAGACTCTTCATTTGAGAACTAATTCGAAGAGTGACCGAGGTGCTTGGATTCAAGCCTTGGCTTCTGATCACAGCATATCTCCTTTAACGAATTATAATCTCTCCCCGGTGCTGAGTGATTTATCGGTATCAACTGGTCGATTAACGAAGCGTTTAGTTGAAGAGGGAATCAGTGAAACTCTTGTTAAGGACTGCGAACGGATAATGCTCTCCGAATTCTCGGAAATTCAAGGGTATCTTCAAGTTCTATGTGAAGAACGATATAACCTGCTTGATACAATTAGGCAGTTGGAGGCTGCTAATTTTGAAGCTGAAGCTTCTGGAATGAACGATGGCGAATTCCAACTTACGAAACACGATCTTTCTTCTGAAGAACGTGGAAAATATAGTGAATGCAGCACCACGGAATCATCAGACGATATTGAGAAACAAGAAATCGAGGAGGAGGTTTCGGACGAAGATGAATTGTCCTTTTACGATACCAGAGATTATTTCGCTGAAAATTCTGTCGAGGTCGAGCCATATGACGTAGGTTTAGGTGGAGTTAATAGCAACACTGAAAATTATCATTATGACAATGCTGACAGAACGCCCGATCAGCTGGAGTTCCAGAACAAATATTCACACATTCGAAGACGTAAACAGCTTCCTGAACCGGTGGAGGAGGAGAAACGAGTTAGCCTTTGGTCAATAATCAAAGACAATGTAGGAAAAGATCTGACAAGAGTATGCCTCCCAGTTTACTTCAACGAGCCGATATCGTCACTGCAGAAATGCTGCGAAGATATGGAGTATTCTTATCTATTGGATCAGGCATACGAGCAAGGAAAACAGGGAAATAGTCTACAAAGGATTCTGAACGTTGCAGCTTTCGCGGTTTCGGGGTATGCTTCGTCGGAAGGCAGGCATTGCAAACCATTCAATCCGCTGTTGGGGGAAACTTATGAAGCGGATTTTCCAGAGAAAGGGATTCGATTCTTCTCCGAGAAGGTGAGTCACCATCCGACTCTGATAGCATGCCATTGTGAAGGGAGAGGGTGGAAGTTTTGGGGAGATAGCAACCTTCAGTCCAAATTCTGGGGAAGGTCGATTCAGCTGGACCCTGTCGGAGTTCTCACACTTGAGTTCGACGACGGCGAGATCTTCCAGTGGAGCAAGGTAACAACAAATATCTATAATCTCATCCTCGGGAAAGTATATTGCGATCACCATGGAACGATGCACATACGTGGCAATCGGGACTATTCTTGCAACCTCAAGTTCAAAGAGCAATCTTTTCTCGACCGAAATCCTCGTCAGGTTCATGGATATGTCGAAGACGTAACGGGGAAAAAAGTTGCAACGTTGTTTGGGAAGTGGGACGACAGCCTGCGTTATGTAAATGGTTATGAGAATGCAAATTCAAAGATTCATGATGGTAGTTTGTTGTGGAAAAGTAGCGAACCGCCCTTGAATCCGACTCGATACAACTTGACTTCATTCGCGATCACTTTGAATGAGCTGACACCAGGGCTCAAGGAGTTGCTACCTCCAACGGATTCCAGACTCCGACCAGATCAACGGCATCTGGAAAACGGCGAGTACGATAAAGCCAATGAAGAGAAGCTACGGTTAGAACAAAGGCAAAGAATTTCGAGGAAGTTACAAGAAAACGGTTGGAAGCCGAGATGGTTTCAGAGAGAGGGTAAAGCTGGACCGTTTCGATATAGGAGAGGTAGGATAGACGAAGACCCTCGAGGCCAATCGATGGAGCATCGACGGGGAGTTGTGGCCGATTGGAGCGGTAGCAGATTTGTGATACAGAACACGATATGA 2322 46.55 MKVKEMHPLCCISVESFGIGCGGDGDKSRDEAAALPLSRTKSMPASFAAFSDGSDGNVIRRPLGSKSTVAGVLQKWTNYGKGWRSRWFLLRNGVLSYAKIRRPENLNLLSPNDDVRLIGESSSNRIPRGDEKDRGRQKQRKAVGVVHLKIGSFRESKSDDRRFYISTATKTLHLRTNSKSDRGAWIQALASDHSISPLTNYNLSPVLSDLSVSTGRLTKRLVEEGISETLVKDCERIMLSEFSEIQGYLQVLCEERYNLLDTIRQLEAANFEAEASGMNDGEFQLTKHDLSSEERGKYSECSTTESSDDIEKQEIEEEVSDEDELSFYDTRDYFAENSVEVEPYDVGLGGVNSNTENYHYDNADRTPDQLEFQNKYSHIRRRKQLPEPVEEEKRVSLWSIIKDNVGKDLTRVCLPVYFNEPISSLQKCCEDMEYSYLLDQAYEQGKQGNSLQRILNVAAFAVSGYASSEGRHCKPFNPLLGETYEADFPEKGIRFFSEKVSHHPTLIACHCEGRGWKFWGDSNLQSKFWGRSIQLDPVGVLTLEFDDGEIFQWSKVTTNIYNLILGKVYCDHHGTMHIRGNRDYSCNLKFKEQSFLDRNPRQVHGYVEDVTGKKVATLFGKWDDSLRYVNGYENANSKIHDGSLLWKSSEPPLNPTRYNLTSFAITLNELTPGLKELLPPTDSRLRPDQRHLENGEYDKANEEKLRLEQRQRISRKLQENGWKPRWFQREGKAGPFRYRRGRIDEDPRGQSMEHRRGVVADWSGSRFVIQNTI 773
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1717144 1723278 + Cp4.1LG13g02230.1 Cpe13g00226 479424

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00226 773 ProSiteProfiles PH domain profile. 66 194 IPR001849 -
Cpe13g00226 773 Gene3D - 482 656 - -
Cpe13g00226 773 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED PROTEIN 2A 4 742 - -
Cpe13g00226 773 SUPERFAMILY Oxysterol-binding protein-like 391 735 IPR037239 -
Cpe13g00226 773 MobiDBLite consensus disorder prediction 294 322 - -
Cpe13g00226 773 SMART PH_update 67 196 IPR001849 -
Cpe13g00226 773 MobiDBLite consensus disorder prediction 125 140 - -
Cpe13g00226 773 Pfam Oxysterol-binding protein 396 732 IPR000648 GO:0008289
Cpe13g00226 773 SUPERFAMILY PH domain-like 65 190 - -
Cpe13g00226 773 MobiDBLite consensus disorder prediction 119 140 - -
Cpe13g00226 773 Gene3D - 689 759 - -
Cpe13g00226 773 Gene3D - 62 195 IPR011993 -
Cpe13g00226 773 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 4 742 IPR000648 GO:0008289
Cpe13g00226 773 Pfam Pleckstrin homology domain 75 190 - -
Cpe13g00226 773 MobiDBLite consensus disorder prediction 294 309 - -
Cpe13g00226 773 Coils Coil 690 710 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00226 K20456 OSBP; oxysterol-binding protein 1 - csv:101216432 1259.2
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00226 Cpe-Chr13:1717144 Cpe13g00595 Cpe-Chr13:5826537 0 dispersed
Cpe13g00226 Cpe-Chr13:1717144 Cpe14g00881 Cpe-Chr14:7292929 0 wgd
Cpe13g00226 Cpe-Chr13:1717144 Cpe05g00242 Cpe-Chr5:1375105 0 wgd
Cpe13g00226 Cpe-Chr13:1717144 Cpe08g00749 Cpe-Chr8:6011359 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g512 . . . Bda08g00569 . . Bma07g01601 Bma14g00510 . . . . Car02g01309 . . . . Bhi11g00211 Tan01g2012 . . . . . . . . . . . . . . . . . Csa05g00404 Chy09g01108 . Blo03g00415 . Bda07g00005 Bda09g00095 Bpe08g01434 Bpe11g00265 . . . . . . . . . . Cpe13g00226 Bhi12g00422 . . . . . . Cla01g00377 Cam01g0396 Cec01g0388 Cco01g0408 Clacu01g0397 Cmu01g0378 Cre09g2134 Lsi09g00408 . Chy06g02027 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000881 4 7 4 5 4 2 5 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 3 4 2 88
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00226 Cpe_Chr13 FPKM 2.648464 1.876043 5.44568 4.275803 6.499893 5.46449 5.745505 18.426863 18.761599 17.522877