Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00232 ATGGCAGCAACAGCTTCATCTTGCATTTTCTGCCAGCGAGCTTCTAATTCTACCGCCAATAACCTTCTTCATTTTGATGAGAGAGTTGTTGCGTTCGAAGATGTAAACCCTTCTGCCGTCAGGCATTACTTGGTAATTCCCAAGGAGCACATTCCCACAGTTAGGAATCTCCAGAGAAGAGCTGAAGATTACTCACTTGTAAGTCACATGTTAGAGGTGGGGCAGACACTTCTATCCCAAGATTCCCCTCAATTAAAGCACAGATTTGGCTTCCATCAGCCCCCAATGAACAGTGTCAACCACCTACACCTCCATTGTTTTGCACTTCCTTACACACCCAGGTGGAAGTTCGCAAAATACATATCATTGGGATCGATCGGATTCATCGAAGCTGAGAAATTGTTGGAGAAAATAAAGCCTTAA 423 44.21 MAATASSCIFCQRASNSTANNLLHFDERVVAFEDVNPSAVRHYLVIPKEHIPTVRNLQRRAEDYSLVSHMLEVGQTLLSQDSPQLKHRFGFHQPPMNSVNHLHLHCFALPYTPRWKFAKYISLGSIGFIEAEKLLEKIKP 140
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1812888 1817839 - Cp4.1LG13g02360.1 Cpe13g00232 479430

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00232 140 SUPERFAMILY HIT-like 4 128 IPR036265 -
Cpe13g00232 140 Gene3D - 10 140 IPR036265 -
Cpe13g00232 140 PANTHER APRATAXIN-RELATED 4 139 - -
Cpe13g00232 140 Pfam Scavenger mRNA decapping enzyme C-term binding 7 115 - -
Cpe13g00232 140 PRINTS Histidine triad family signature 30 48 IPR001310 -
Cpe13g00232 140 PRINTS Histidine triad family signature 97 107 IPR001310 -
Cpe13g00232 140 PANTHER HISTIDINE TRIAD NUCLEOTIDE-BINDING PROTEIN 3 4 139 - -
Cpe13g00232 140 ProSiteProfiles HIT domain profile. 9 117 IPR011146 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00232 K22966 HINT4; sulfate adenylyltransferase (ADP) / adenylylsulfatase [EC:2.7.7.5 3.6.2.1] - csv:101205151 275.789
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00232 Cpe-Chr13:1812888 Cpe20g00622 Cpe-Chr20:3876561 8.63E-06 dispersed
Cpe13g00232 Cpe-Chr13:1812888 Cpe08g01372 Cpe-Chr8:9857797 6.74E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g536 . . . . Bpe05g00579 . . . . . . Cma15g01124 . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00420 . . . . . . . . . . . . Cmo15g01184 . . . . . Cpe13g00232 Bhi12g00446 . . . . . . Cla01g00396 Cam01g0414 Cec01g0405 Cco01g0426 Clacu01g0415 Cmu01g0396 Cre09g2116 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009294 0 9 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00232 Cpe_Chr13 FPKM 86.694656 96.640686 0.055326 0.066599 0.025281 0.070987 0.0 0.022956 0.034565 0.0
Cpe13g00232 Cpe_Chr13 FPKM 96.576347 101.930786 0.056937 0.068537 0.026017 0.073054 0.0 0.0 0.035572 0.0
Cpe13g00232 Cpe_Chr13 FPKM 152.626129 157.148651 0.11434 0.097538 0.037025 0.04616 0.0 0.0 0.03229 0.0