Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00233 ATGGCTACTTCTCTAGTACCCAGATCCTTGTTTCGCATTCTTTATCTCTTCCCCACAAGCCCTTTGACTTTGAACGCTCAATCGTTCAATCCCTTGAAGTTCTCTGCAAATCGAGCTATGAGTTCCGCGTCAACTCAGCGCCTTTTCCAGCTAAAATTTGATCCACTTACGGGTAACTCGGAGTGGGTAGTCATAGAAGAAGAGGTTGAGGGAGTTTCAGAGAATACCCAGAAACCCATTTTGGCGACAACTTCATATTTGGATATGCTTAATGATGCCACTAGAAACAGAGCGTTTCGCGAAGCCATTGATAAGACTATATCAAAACCTTGCCGTGTTCTTGATATTGGGTATTTTTCTAGTCCTGTTTTCAGCCTTCTTGCTTTGAAATCGAGGAAAAGAAGATGTGCTGGAACTGGTTTGCTATCAATGATGGCTGCACGGGCAATGGACTCTGCCGTGGGTGATTCCAAGGGAATGGTTACGGCTTGTGAATCCTATCTTCCAATGGTGAAGTTAATGAGGAAAGTCTTGCGTCTTAATGGGATGGAAAGGAAAGTTAAAGTTATTAACAAACGCTCTGATGAACTTCAGTTTGATTCTGATATCATTTCTCGAGCTGATGCCCTTGTTAGTGAGATTTTGGACTCAGAACTGTTAGGCGAGGGGCTTATACCGACGTTACAACATGCACATGACAAGCTTTTAGTGGAAAATCCATTGACTGTGCCATACAGAGCCACCATATACGGCCAGCTGGTTGAAAGCACATATTTATGGAAGCTTCATGATTTATACAACAATGAAGCTAAAGCATGTGATGCCATCCATCTCGTTCCAGAAGGGATGGATCCTATCATATGTGTTAAGCCACAGCAATATCCAATGCATTGTGATGCAATTGCCAAAGAAGTGAAGCTGCTCTCAGAACCCTTCAGGGTTTTTGAATTTGATTTTTGGAAACGTCCAGAGAGTAAGGCTGAAAAGGAGTTGCATATCAAGGCAACTGACGGTGGAAGAGTTCATGCTGTAGTGTCATGGTGGATGCTGCAGCTCGATCGTGAAGGAACGGTCTTTTATTCCACTGCCCCGAAGTGGATATCTCCTCCTTTCAACATAGGAGCTGGTGACTGGTGTGACCATTGGAAACAGTGTGTTTGGTTTATCCCAGACAATGGTGTGTCAATATCCAAGGATGAACAAGTTCATATTTGTGCTTCTCATGATGAAACTACCTTCTCATATCATCTGAAAGCTCAAATCCCAAGAGGTGAGGCTTTGCAGCATGGCGACAATGCTGAGAATTTTAAACTCATATTGCCACCAGAAAGAATTGCATTGCAAGGAAGATCTCCCTCTGCATGCATGATTGCAGATGATAGTGTTTTCTTAACACTCATGGTTGCTTGCCTTTCGAAACAAACACTTGTATTATCACTGTTCCCGGGGATTCGCGAAAAGGGTGCCAAGTATTTGCAGGCTGTTTCGTATGCAAACGATATCTCTATGGATAGTATAAAAGTTATTGAAAAGAGGAAGTCGTGCTTGACCGTGCACGATACGTTTGAGAAAAAGGTTGACTTGCTTATCAGTGAACCATTCTACTATGGTAATGACAATGCACTCCCATGGCACAACCTGCGGTTTTGGAAGGAGCGAACGATGCTCGACTCAGTCCTATCTGATGATGCGCTAATAATGCCAAGTAAAGGCATATTGCGAGCTTGTTTCATGTCATTGCCTGATCTATGGAGCAGCCGTCGTCGATTGGGAACAATCGAAGGCTTTGATCACTCTGTTACAAATGACACTTTAGGAGCTTGTGGTGAGTTACCTGAAGGACAAGAAGGCCCATGCCTGGCTTTTTACATTTGGCAGTGTGGAGAATACGAGGAACTCAGTGAGATATTTACAGTGATGGAGTTTGATTTCTCAAAACCAATAAGCCCCTGTAGTGGGAAGAGCCAGGTTAAGGTAAGCAAGGCTGGAACATGTCATGGAATTGCACTGTGGATTGATTGGGTTATGGATTCAAAGAGCTCCATTGTCATATCCACAGGCCCAGATAAGAGATACTGGAAACAAGGAGTTAAGCTTCTTGCCAACCCCGTGGCAGTTGGAGCTCGAGGCTCCGCTGATGGCGTCGAATGCTGCTCTGCTGTCATCGAAGCATCCTTCGATCCATCAACGGGTGAACTCGACGTAAGACATTCTTTTTTGTAA 2223 43.99 MATSLVPRSLFRILYLFPTSPLTLNAQSFNPLKFSANRAMSSASTQRLFQLKFDPLTGNSEWVVIEEEVEGVSENTQKPILATTSYLDMLNDATRNRAFREAIDKTISKPCRVLDIGYFSSPVFSLLALKSRKRRCAGTGLLSMMAARAMDSAVGDSKGMVTACESYLPMVKLMRKVLRLNGMERKVKVINKRSDELQFDSDIISRADALVSEILDSELLGEGLIPTLQHAHDKLLVENPLTVPYRATIYGQLVESTYLWKLHDLYNNEAKACDAIHLVPEGMDPIICVKPQQYPMHCDAIAKEVKLLSEPFRVFEFDFWKRPESKAEKELHIKATDGGRVHAVVSWWMLQLDREGTVFYSTAPKWISPPFNIGAGDWCDHWKQCVWFIPDNGVSISKDEQVHICASHDETTFSYHLKAQIPRGEALQHGDNAENFKLILPPERIALQGRSPSACMIADDSVFLTLMVACLSKQTLVLSLFPGIREKGAKYLQAVSYANDISMDSIKVIEKRKSCLTVHDTFEKKVDLLISEPFYYGNDNALPWHNLRFWKERTMLDSVLSDDALIMPSKGILRACFMSLPDLWSSRRRLGTIEGFDHSVTNDTLGACGELPEGQEGPCLAFYIWQCGEYEELSEIFTVMEFDFSKPISPCSGKSQVKVSKAGTCHGIALWIDWVMDSKSSIVISTGPDKRYWKQGVKLLANPVAVGARGSADGVECCSAVIEASFDPSTGELDVRHSFL 740
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1817493 1824897 + Cp4.1LG13g02300.1 Cpe13g00233 479431

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00233 740 Gene3D - 572 739 - -
Cpe13g00233 740 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 36 680 IPR025799 GO:0016274|GO:0018216
Cpe13g00233 740 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 7 36 680 - -
Cpe13g00233 740 Gene3D Vaccinia Virus protein VP39 79 245 IPR029063 -
Cpe13g00233 740 Gene3D - 246 419 - -
Cpe13g00233 740 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 65 418 IPR025799 GO:0016274|GO:0018216
Cpe13g00233 740 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 457 740 IPR025799 GO:0016274|GO:0018216
Cpe13g00233 740 Gene3D Vaccinia Virus protein VP39 420 568 IPR029063 -
Cpe13g00233 740 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 498 708 IPR029063 -
Cpe13g00233 740 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 86 406 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00233 K11438 PRMT7; type III protein arginine methyltransferase [EC:2.1.1.321] - csv:101204902 1284.24
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00233 Cpe-Chr13:1817493 Cpe18g00373 Cpe-Chr18:5066541 3.58E-09 dispersed
Cpe13g00233 Cpe-Chr13:1817493 Cpe04g01068 Cpe-Chr4:9386123 2.05E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g537 . . . . . . . Bma14g00044 . . . Cma15g01123 . Car15g01028 . . . . . . . . . . . . . . . . . Cone8ag0397 Cone12ag0382 . . . Csa05g00421 Chy09g01088 . Blo03g00418 . Bda07g00034 . . Bpe11g00269 . . . . Cmo15g01183 . . . . . Cpe13g00233 Bhi12g00454 . . Lac11g2283 . . . Cla01g00397 Cam01g0415 Cec01g0406 Cco01g0427 Clacu01g0416 Cmu01g0397 Cre09g2115 Lsi09g00423 . . Cme09g01617
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004964 2 7 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00233 Cpe_Chr13 FPKM 99.841309 98.585243 0.028456 0.092103 0.028006 0.0 0.0 0.0 0.028017 0.0