Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00234 ATGGCATTCTCCCTTAACTCATTCTTCTTCTTCTTCATTTCCGTTCCGGCTTTCTTTCTCCTAGCCGCCGCCAAGCACCGCCGCCACCACTGGGTCGGACCCACCGGCCACCGCCTTATCAAAGTGGACGTCAACGGCATCTCCGGCGAGTTCCTCTCCGTCCAAGCCGCCGTGGATGCAGTCCCCGATTACAATACCGTCAACACCCTCATCCGAATCAGCCCTGGTTATTACGTGGAGAAGGTGGTGGTGCCGGCGACGAAGCCGTACATAACATTTGAAGGAGGGGGAAAAGAGACGACGGTGATAGAGTGGCACGACCGAGCAGGTGACCGTGGTCCCAGCGGGCAGCAGCTGCGTACTTATAGAACAGCATCTGTCACAGTTTTTGCTAATTACTTCTCTGCCCGAAACATCAGCTTCAAGGATTGCGAGCTGCACTCGATCGCCACCCGGTTCGGTTCCATAGCGGCCCAAGATAGAAACTCACCTAACGAGAAGACCGGGTTCGCTTTCGTCCGATGCAAGGTGACCGGTTCTGGACCTATATACGTGGGCCGGGCTATGGGCCAGTACTCCAGAATCGTCTACGCGTATACATACTTTGATGACGTGGTGGCCCACGGTGGATGGGATGACTGGGACCACAGCAGCAACAAAAACAAGACTGTATTTTTTGGAGTATACAAGTGCTGGGGCCCAGGAGCAAGTAAAGTAAAGGGAGTATCATGGGCCAAGGAATTGGAGTTTGAAGAGGCCCATCCATTTCTTGTGAAGAGTTTTGTGAATGGCAGGCACTGGATTGCACCCTCTGATGCGTAG 822 53.77 MAFSLNSFFFFFISVPAFFLLAAAKHRRHHWVGPTGHRLIKVDVNGISGEFLSVQAAVDAVPDYNTVNTLIRISPGYYVEKVVVPATKPYITFEGGGKETTVIEWHDRAGDRGPSGQQLRTYRTASVTVFANYFSARNISFKDCELHSIATRFGSIAAQDRNSPNEKTGFAFVRCKVTGSGPIYVGRAMGQYSRIVYAYTYFDDVVAHGGWDDWDHSSNKNKTVFFGVYKCWGPGASKVKGVSWAKELEFEEAHPFLVKSFVNGRHWIAPSDA 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1827937 1830986 + Cp4.1LG13g02310.1 Cpe13g00234 479432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00234 273 Gene3D - 142 272 IPR012334 -
Cpe13g00234 273 SUPERFAMILY Pectin lyase-like 38 270 IPR011050 -
Cpe13g00234 273 PANTHER PECTINESTERASE 68-RELATED 23 142 - -
Cpe13g00234 273 PANTHER PECTINESTERASE 68-RELATED 141 272 - -
Cpe13g00234 273 Pfam Pectinesterase 48 143 IPR000070 GO:0030599|GO:0042545
Cpe13g00234 273 Pfam Pectinesterase 151 264 IPR000070 GO:0030599|GO:0042545
Cpe13g00234 273 Gene3D - 39 141 IPR012334 -
Cpe13g00234 273 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 23 142 - -
Cpe13g00234 273 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 141 272 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00234 Cpe-Chr13:1827937 Cpe03g00212 Cpe-Chr3:1059808 1.64E-44 dispersed
Cpe13g00234 Cpe-Chr13:1827937 Cpe05g00247 Cpe-Chr5:1412690 5.49E-63 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00234 - - csat:104728490 384.03