Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00252 ATGAACCGGAGCACTAAAACAGAGCCGGATTTTGGTTTTCTTGAGCCAATTCGCCGTCACTTGTTGGGCGAACCGGAGGCTGCCGTCGTTCCCGGCGATCGGACTGGTAGTTTCAGTAGCTTGATTCCATGTCTTGAAGAAAATTGGGGTGATTTGCCTCTCAAGGTGGACGATTCTGAAGATATGTTGCTCGCCGCCGTTCTCCGGGAAGCCGTCGGTTCTGGATGGGTTCCGACGCTCAATCTGTCGTCATTTGGAAGTTTCGATTTTGGGGTCTCGGCGGTGCAGTCGGAGCTTCCGGAGAGTTTTCCCCCGGTGGTGGAACCGGAGAGGGGGAAGCATTATAGAGGAGTGCGGCAACGACCATGGGGGAAGTTCGCGGCGGAGATTCGGGACCCGGCGAAAAATGGCGCTAGAGTTTGGCTTGGAACTTATGAGACGGCGGAGGATGCGGCTTTAGCTTATGATCGGGCAGCCTTCCGAATTCGTGGGTCAAGGGCTCTTCTAAATTTCCCCCTTCGTGTGAACTCTGGCGAGCCCGAACCGGTTCGGGTCAGGTCGAAGCGATCCTCGCCGGAGCTTTCATTGTCGCCGAAGCGGCGGAAGAAGGTTGGCTCCGCCGCCGAAGGTAGGGGAGTACAAGTGGACAACACAAGTGGCAAGCCTTACACGTGGAGGGCAGCTGATTGTCAGCCAATGCTAATATTTAAATAA 714 55.32 MNRSTKTEPDFGFLEPIRRHLLGEPEAAVVPGDRTGSFSSLIPCLEENWGDLPLKVDDSEDMLLAAVLREAVGSGWVPTLNLSSFGSFDFGVSAVQSELPESFPPVVEPERGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEDAALAYDRAAFRIRGSRALLNFPLRVNSGEPEPVRVRSKRSSPELSLSPKRRKKVGSAAEGRGVQVDNTSGKPYTWRAADCQPMLIFK 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1966910 1967623 + Cp4.1LG13g02430.1 Cpe13g00252 479450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00252 237 Pfam AP2 domain 114 164 IPR001471 GO:0003700|GO:0006355
Cpe13g00252 237 MobiDBLite consensus disorder prediction 179 220 - -
Cpe13g00252 237 MobiDBLite consensus disorder prediction 181 207 - -
Cpe13g00252 237 Gene3D AP2/ERF domain 113 175 IPR036955 GO:0003700|GO:0006355
Cpe13g00252 237 ProSiteProfiles AP2/ERF domain profile. 114 172 IPR001471 GO:0003700|GO:0006355
Cpe13g00252 237 PANTHER BNAANNG21280D PROTEIN 33 213 - -
Cpe13g00252 237 SUPERFAMILY DNA-binding domain 114 174 IPR016177 GO:0003677
Cpe13g00252 237 SMART rav1_2 114 178 IPR001471 GO:0003700|GO:0006355
Cpe13g00252 237 CDD AP2 113 172 IPR001471 GO:0003700|GO:0006355
Cpe13g00252 237 PRINTS Ethylene responsive element binding protein signature 138 154 IPR001471 GO:0003700|GO:0006355
Cpe13g00252 237 PRINTS Ethylene responsive element binding protein signature 115 126 IPR001471 GO:0003700|GO:0006355
Cpe13g00252 237 PANTHER DNA-BINDING DOMAIN 33 213 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00316 Cpe-Chr1:1823796 Cpe13g00252 Cpe-Chr13:1966910 7.35E-29 dispersed
Cpe05g00228 Cpe-Chr5:1291073 Cpe13g00252 Cpe-Chr13:1966910 1.59E-43 dispersed
Cpe05g00735 Cpe-Chr5:4505908 Cpe13g00252 Cpe-Chr13:1966910 9.45E-29 dispersed
Cpe12g00144 Cpe-Chr12:921633 Cpe13g00252 Cpe-Chr13:1966910 1.15E-33 dispersed
Cpe12g00557 Cpe-Chr12:5679142 Cpe13g00252 Cpe-Chr13:1966910 2.53E-21 dispersed
Cpe13g00252 Cpe-Chr13:1966910 Cpe17g00430 Cpe-Chr17:3216179 1.64E-21 dispersed
Cpe15g00076 Cpe-Chr15:552562 Cpe13g00252 Cpe-Chr13:1966910 2.48E-26 dispersed
Cpe13g00252 Cpe-Chr13:1966910 Cpe08g00723 Cpe-Chr8:5689043 9.69E-25 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50388 PF00847 AP2 1.10E-14 CL0081 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00252 K09286 - csv:101221583 315.849