Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00255 ATGCAAAATGCACCGCTTTTACTCCATTTCCCCATTTTGCCCTCCCCCTTCTCACTATCCTCTATTTCAGCTACTGCTTCTGCTTCTGCTCTTCCTTATTTCAGCTCATTAATCCGCAGTCGAGTTACCGCCCCAAACTCCAGGGTTTCTGTTCTTCCAAGAGGAGTTTGTCTTAGGGCAATGCCTTCTACTGGTGGTGGCGACGGCGACGTTAATGGTGGTGCTTTCTCTGGCTTCAGCCTCTCTGAATCCTCGTTCTTGGCCTCCTTAATGCCTAAGAAGGAAATTGCTGCTGATCGCTTCATCGAGGCTAATCCTGAGTTCGATGGCCGTGGTGTTTTGATTGCCATTTTTGATAGCGGTGTTGACCCTGCTGCTGCGGGATTGCAAGTGACATCAGATGGAAAGCCTAAAATATTGGATATTCTTGATTGTACGGGAAGCGGCGATGTTGATATCTCGAAGGTGGTGAAGGCCGACGCAGATGGTTGCATAATTGGAGCTTCAGGGGCTTCTTTGGTTGTCAATTCTTCGTGGAAGAACCCATCTGGTGAATGGCATGTAGGCTACAAATTCGTCTATGAGCTATTTACTGACACATTGATTTCTCGTTTGAAGCGAGAGAGAAAGAAGGAATGGGATGAAAAGAACCAGGAGGAGATTGCCAAGGCTGTCAAGGTTCTTGATGAATTTGATCAGGTTGTTGACCATACGAAACACACCAAGGTGGAGGACCCAAATCTGAAAAGGGTACGAGAGGACCTTCAATGCCGAGTTGATATTCTTAAAAAACAAGCTGAGTGCTATGATGACAAGGGGCCAATCATTGATGCTGTTGTTTGGCATGATGGAGAAGTATGGAGAGTTGCTCTTGATACACAAAGCCTTGAGGATGAACCTGACTCCGGGAAACTTGCCAACTTTGTACCACTAACAAATTATAAGATCGAAAGAAAGTTCGGCGTGTTCAGCAAGTTGGATGCTTGTACATTTGTTGTAAATGTGTATGATGAGGGAAATATCTTAAGTATAGTTACAGATTGCTCCCCTCATGGTACTCATGTTGCTGGTATTGCTTCTGCTTTCCACCCAAAGGAACCCTTGTTGAACGGAGTTGCTCCCGGTGCACAACTGATATCTTGTAAAATTGGAGACACACGTTTAGGGTCAATGGAGACTGGAACCGGGCTGACTCGAGCGTTGATAGCAGCTGTGGAGCATAAATGTGATCTCATAAATATGAGTTATGGTGAGCCGACATTACTTCCGGACTATGGTCGCTTTATTGACCTTGTAAATGAGGCAGTAAACAAGTACCGGTTAATATTTGTGAGCAGTGCTGGTAATAGTGGACCAGCTTTGAATACTGTTGGTGCTCCTGGTGGCACGAGTTCAAGCATTATAGGAGTTGGTGCTTATGTTTCTCCATCGATGGCTGCTGGTGCTCATTGTGTGGTTGAAGCTCCCAGTGAAGGGCTTGAATATACTTGGTCGAGTCGTGGACCAACGGCAGATGGAGATCTTGGTGTTTGTATAAGTGCTCCTGGTGCTGCTGTTGCTCCTGTTCCTACATGGACCCTTCAAAGACGAATGCTTATGAACGGAACCTCTATGGCGTCTCCATCTGCTTGTGGGGGTATTGCATTACTCATTAGTGCAATGAAGGCTGAGAACATTCCTGTGAGCCCATACCTTGTGAGGAAGGCTCTTGAGAATACTACCATTCCGGTAGGTTGCTTACCAGAAGATAAATTATCCACTGGACAGGGGCTCATGCAAGTTGACAAGGCATATGAATATATAAGGAAGTCCCAGAATGTTCCTTATGTTTGGTATAAAGTGAAGATTAATCAATCTGGAAAATTATCTCCCACGACACGAGGAATTTACTTAAGAGAGGCTAGTGCCTGCCGTCAAAGTTCTGAGTGGACAGTACAAATCGAACCTCAGTTTCATGAAGATGCAAATAACTTAGATGAGTTGGTCCCTTTTGAGGAGTGTATCGCGCTGCATTCCAGTGAGAAAACAGTCGTCACTATTCCTGATTATTTGCTTCTCACACATAATGGACGCAGCTTCAACGTAGTGGTTGATCCTTCAAATCTTAGTGATGGCCTGCACTACTATGAACTCTATGGCGTTGATTGCAAGGCTCCATGGCGAGGCCCTCTTTTCAGGATCCCAGTAACTATAACAAAGCCAGTAGTTGTGGTGGATCGCCCGCCAATAGTTTCTTTTCCAAGAATGTCGTTTCTACCAGGCCATATAGAACGGAGATTTATAGAGGTACCACGTGGTACTAGTTGGGTTGAAGCAACAATACAAACAACAGGATTTGACACAACGAGGAAATTTTTTATTGACACTGTCCAGATTTTGCCCTTGAAGAGGCCTTTGAAGTGGGAAAGTGTGGTAACTTTCTCGTCTCCTGCTTCCAAAAGTTTTTGTTTTCCTGTTGTGGGTGGCCAGACTATGGAACTAGCAATTGCTCAATTTTGGTCAAGTGGCATTGGAAGTAGGGAATCATCACTCGTTGATTTTGAGGTAACATTTCATGGGATTAGTACCAATAAAGATGAAATAGTGCTTGATGGAAGTGAAGCACCCGTTAGAATTGATGCTGAAGCTTTGTTGGCATCGGAAAAACTTACTCCTGCGGCCATCCTGAACAAGGTAAAAGTTCCATATCGGCCATGTGAAGCCAAACTTTGCACACTGCCTACAGATCGTGACAGATTGCCATGTGGAAAACAGATTTTATCACTAACTCTAACTTACAAGTTCAAACTAGAAGATGCTGCCGAAGTGAAACCTTCTATTCCATTGTTTAATGACCGGATATATGACAACAAATTTGAGTCTCAGTTTTATATGATCTCTGATGCAAATAAGCGTATTTATGCAACTGGTGACGCATACCCAAAGTTTAAAAAACTTCCCAAGGGAGAATACAATTTACAGCTGCATATAAGGCACGAGGACGTGCAATGTCTGGAAAAAATGAAGCAGTTGGTGGTGTTTATAGAAAGAAAATTGGACGAGAAGGATTCCATTAAATTGAGCTTTTTCTCTCTACCTGATGGTCCTATGATGGGGAATGGTGCTTACAAATCCTCAGTTTTAGTTCCTGGGAAAAAAGAAGCATTCTATTTGGGCCCACCATCAAAAGATAAGTTTCCCAAGAATTCTCCTCATGGGTCGGTTCTGTCGGGAGCTATCTCATATGCAAAGCTAGGTATTTTTAGTTCAAATGTTAAGGAAAATTCACGGAAGATGCCTGTATATTATCAACTCTCCTTCATAGTGCCACCAACTAAGCCCGATGAAGACAAGGGTAAAGGTTCTTCTCCAGCCTTGACAAAGACAATCTCTGAGCGTCTGATGGAAGAGGTCCGTGATGCGAAGATCAAAGTACTTTCAAGCCTAAAACCAGAAAAAACTGAAGATTTTGCAGAATGGAAGAAGTTCTGCTCATCCCTCAAGAGTGAATATCCAAAATACACTCCGCTGCTTGCAAAAGTATTGGAAGGTTTGGTTTCTCAGAGAAATGTTGAGGATAGAGACTGCCATGCGGAAGAGGTCATTGATGCTGCAAACGAGGTAGTTGAGAGCATAGACAAAGATGAGTTGGCCAAATATTTTGCACTGAAAAATGATCCTGAAGATGAAGACGTGGAGAAACTTAAGAAAAAGATGGAGGTTACCCGGGATCAATTGGCAGAGGCACTATACCAAAAAGGGCTTGCGTTGGCAGAATTGGAGTCTTTAAAGACCAAGGTTGAGAATGCTTCGACACTTGCTTCAAAAGACGCAATAGATGCTGGGAAATCTGAGGATTCTTTTGAAGAGAATTTCAAAGAACTGAAGAAATGGGTAGATGTCAAGACCTCTAAGTTCGGAACTCTTGCAGTGTTGCGCGAAAAACGCCGTGGAAGGCTAGGTGCAGCTCTGAAGGTAGTTAATGATGTTATTGAAAACGATGGAGATACTCCGAAGAAGAAACTCTACGAACTGAAGCTGTCTTTGCTCGAGGAGATCGGTTGGTCTCATTTGGTATCATATGAAAAGCAATGGATGCATGTACGCTTTCCCACAACCCTGCCTCTATTTTAA 4113 43.57 MQNAPLLLHFPILPSPFSLSSISATASASALPYFSSLIRSRVTAPNSRVSVLPRGVCLRAMPSTGGGDGDVNGGAFSGFSLSESSFLASLMPKKEIAADRFIEANPEFDGRGVLIAIFDSGVDPAAAGLQVTSDGKPKILDILDCTGSGDVDISKVVKADADGCIIGASGASLVVNSSWKNPSGEWHVGYKFVYELFTDTLISRLKRERKKEWDEKNQEEIAKAVKVLDEFDQVVDHTKHTKVEDPNLKRVREDLQCRVDILKKQAECYDDKGPIIDAVVWHDGEVWRVALDTQSLEDEPDSGKLANFVPLTNYKIERKFGVFSKLDACTFVVNVYDEGNILSIVTDCSPHGTHVAGIASAFHPKEPLLNGVAPGAQLISCKIGDTRLGSMETGTGLTRALIAAVEHKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKYRLIFVSSAGNSGPALNTVGAPGGTSSSIIGVGAYVSPSMAAGAHCVVEAPSEGLEYTWSSRGPTADGDLGVCISAPGAAVAPVPTWTLQRRMLMNGTSMASPSACGGIALLISAMKAENIPVSPYLVRKALENTTIPVGCLPEDKLSTGQGLMQVDKAYEYIRKSQNVPYVWYKVKINQSGKLSPTTRGIYLREASACRQSSEWTVQIEPQFHEDANNLDELVPFEECIALHSSEKTVVTIPDYLLLTHNGRSFNVVVDPSNLSDGLHYYELYGVDCKAPWRGPLFRIPVTITKPVVVVDRPPIVSFPRMSFLPGHIERRFIEVPRGTSWVEATIQTTGFDTTRKFFIDTVQILPLKRPLKWESVVTFSSPASKSFCFPVVGGQTMELAIAQFWSSGIGSRESSLVDFEVTFHGISTNKDEIVLDGSEAPVRIDAEALLASEKLTPAAILNKVKVPYRPCEAKLCTLPTDRDRLPCGKQILSLTLTYKFKLEDAAEVKPSIPLFNDRIYDNKFESQFYMISDANKRIYATGDAYPKFKKLPKGEYNLQLHIRHEDVQCLEKMKQLVVFIERKLDEKDSIKLSFFSLPDGPMMGNGAYKSSVLVPGKKEAFYLGPPSKDKFPKNSPHGSVLSGAISYAKLGIFSSNVKENSRKMPVYYQLSFIVPPTKPDEDKGKGSSPALTKTISERLMEEVRDAKIKVLSSLKPEKTEDFAEWKKFCSSLKSEYPKYTPLLAKVLEGLVSQRNVEDRDCHAEEVIDAANEVVESIDKDELAKYFALKNDPEDEDVEKLKKKMEVTRDQLAEALYQKGLALAELESLKTKVENASTLASKDAIDAGKSEDSFEENFKELKKWVDVKTSKFGTLAVLREKRRGRLGAALKVVNDVIENDGDTPKKKLYELKLSLLEEIGWSHLVSYEKQWMHVRFPTTLPLF 1370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1977855 2000478 - Cp4.1LG13g02640.1 Cpe13g00255 479453

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00255 1370 SUPERFAMILY Subtilisin-like 96 608 IPR036852 GO:0004252|GO:0006508
Cpe13g00255 1370 CDD Peptidases_S8_Tripeptidyl_Aminopeptidase_II 90 577 IPR034051 GO:0006508|GO:0008240
Cpe13g00255 1370 Gene3D - 611 743 - -
Cpe13g00255 1370 ProSiteProfiles Serine proteases, subtilase domain profile. 84 598 - -
Cpe13g00255 1370 PRINTS Subtilisin serine protease family (S8) signature 534 550 IPR015500 -
Cpe13g00255 1370 PRINTS Subtilisin serine protease family (S8) signature 110 129 IPR015500 -
Cpe13g00255 1370 PRINTS Subtilisin serine protease family (S8) signature 347 360 IPR015500 -
Cpe13g00255 1370 ProSitePatterns Serine proteases, subtilase family, serine active site. 535 545 IPR023828 -
Cpe13g00255 1370 Gene3D - 1121 1370 - -
Cpe13g00255 1370 ProSitePatterns Serine proteases, subtilase family, histidine active site. 351 361 IPR022398 -
Cpe13g00255 1370 Gene3D Peptidase S8/S53 domain 93 185 IPR036852 GO:0004252|GO:0006508
Cpe13g00255 1370 Gene3D Peptidase S8/S53 domain 276 608 IPR036852 GO:0004252|GO:0006508
Cpe13g00255 1370 Coils Coil 1225 1245 - -
Cpe13g00255 1370 Coils Coil 252 272 - -
Cpe13g00255 1370 Pfam Tripeptidyl peptidase II 878 1062 IPR022229 -
Cpe13g00255 1370 Gene3D - 209 271 - -
Cpe13g00255 1370 PANTHER TRIPEPTIDYL PEPTIDASE II 72 1271 - -
Cpe13g00255 1370 Pfam Subtilase family 110 574 IPR000209 GO:0006508|GO:0008236
Cpe13g00255 1370 PANTHER PEPTIDASE S8 72 1271 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00255 K01280 TPP2; tripeptidyl-peptidase II [EC:3.4.14.10] - csv:101220162 2418.27
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g697 Blo06g01128 . . . . . . . . . . Cma15g01096 . Car15g01007 . . . . . . . . . . Cla01g00436 . . Cco01g0470 . . Cre09g2075 . Cone5ag0871 . . . . . . . . . Bda15g00725 . . Bma08g00301 . . . Cmo15g01154 . . . . . Cpe13g00255 Bhi12g00508 . . . . . Lcy12g0027 . . . . . . . . . . Cme09g01554
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005749 1 1 2 3 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 2 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00255 Cpe_Chr13 FPKM 16.655874 19.61528 20.872999 23.416979 29.152092 22.120495 27.8675 27.419907 25.831299 25.751551