Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00262 ATGGATTCGTCTGCGAAAGTCGAGTCGAAGCTCAGAAGAGTTCCCAAGGGTTTCAACGAGGCGCGGAAGGTGCGGGTGGTCGCAAGGATTAAAAGCTTCGCTGATCAGGTACTAGATGGAGGTTCTATGGCGTCGTGGATCTCTGTGAACAAGCCTGACGGAGATGCTTCTGACTCTGTAACCATCTCTTTCGGAGGTCAACCAGTGAGTCGTAAGGAGACTTATGAAGTAGATTATTGCTATGAGCAGAATGAAGACACTGAAAAAATATATGCAAAAGAGGTGAAACCTCTGATTTCTGGAGTCTTTGAAGGTCATCATGCAACCGTTATTGCATATGGTGCAAGAGGCACTGGAAAAACTTCTACGATTCAGGGTACTATTGAGAAACCGGGTTTGGCATCATTATCCATGAATGAATTACTTTTAATGGCCAAAGAAAAAGGGAAGTCAATTTTCATATCGTACTATGAAGTTCATGTGGACCATGTTTATGATTTACTGGATCCGAAACGACCAACAGTTTTAGTATTGGATAACGGTCATGGCAAAATACAACTTAAGGGACTTTCGCAGGCAAGTTACTCTGTTTTTGCCTTTATTCCAGTGAAATCCTTGTCAGACTTCTACGAACTATATTTGGGTTCTAGTTCACGTAAACAAGGGCAAAAGATTGCAAATGAATCCCCTCACAGAAGCCACCGTGGCTTGATAGTGCATATTTCATCTACCAATGATGCTGCTTCGGATGCTCGTTCTGTTGCCAAGATGAATTTTGTTGACATGGCTGGTTATGAAGATGCGAGAAGGAAAAGTACTGATGGCACTAGCCTCGTTGAAAATAGTAAAATTAACAAGTTCACATACGCCTTGCTAAATGTAGCTTCTGCGTTGAATTCTAATGATAACCATGTGCCATATCGAGAAAGTAAGCTTACACGCATTCTGCAAGAATCCATGGGTGGAACGCAAAGCAAAATTTTGATGATTTCTTGCTTGAATTCATCATTTTGCCAAGACTCCATCTACATGGCTAACTTGGCGGCTAGATCTTGTCAAGTAACCAAGCGGGTTGCTTCAGATGCCATTAGGAAAATAAAGAGCTCGACAAATTCTGTGGTGCATTCATCACTTAGAAACCAGATACCTAAGAGCGTTTCTGCAACTGCAAAGAAGCAGACCATCTCCCGATCTTATTTTTCTGAAAAGAAGGCAAGCGTTAGTACAGCCTCTTCCTATACAATAAAAGGAAGGAAGTTGTTTGAAGATGCAACAAGTCATTTGGGAAAACGGGACAAGGAAATTCAATTGCCAAGCGCATCTTCTGATTGTGTACCTCTGAAGTATGAAGAAGCTACTTCTGTTGTGGACCAGGCAAATCCTTTGCCGTGTTCTCTAAAGCCTGAAGAAGAATGTACTTCTGCATTGGAAAAGGCACGTAAATATATTTCCAGGTTCTATAATGCGAAGAACACATGCCTTATTGTTTTTTCATTAAAGATATTTTGTATTTCTCAGGAATTCTCTGCCGCAGGAATTTCCAGTGCAGTAGAAACTACCATAGCGCCAAAGGATGTTTCGAATAGCAATCATGATCCTGGAAGAATCATTGATGGCATGAATGCATTATCTGCCACTGGAGATGGTCCAAACATCAATGACGGAAACAATTGTTCGATGATCAATATTGTTGATGAACTTCCTGTGGAAAGCACACCTGGCGTGACAAGTAGCACTAGTCTGTCTGTTGTTCAAAGTTCAGACTTGGACAAGGAAAACAATGGTTGTAGTACGATCAATGAAGATAAATCTCCTCCATTAAGTGCACAATTACAAGCATTATCCAACAATTGGAGATCAGTTTGTTCTTCCACACGGGCGTGCTTAAAGGTCTCTGATAATAATGCTCCCTATGGCTTAGTCTTTACTGATGTTACAGAACCACAAACTCCAACCATGGAACGGAGTTTGCGCGTCTACAATGAACAAGATGTTGTAAATCCATCCACTCCTTGGGAAACATTCAGCCAGCGCAGTACCGGTGTGAAGAAGTCACTTGTGGAAGATTATCTAAGGTTTCTAAACACAGCTAGCAAGGAAGAGCTTAAAAAATTGAAAGGAATTGGAGAGAAGAGAGCGACATCAATTATTGAATTTCGTGCAGAATCGCCTCAGCCTTTTAGAAGTCTCGATGATTTAATGGAGATCGGTCTATCAGCAAAGCAGATTAAGGAAATGATGAAAAAGGAAGTTGCTGGGCGATTATTCAACTAG 2274 41.29 MDSSAKVESKLRRVPKGFNEARKVRVVARIKSFADQVLDGGSMASWISVNKPDGDASDSVTISFGGQPVSRKETYEVDYCYEQNEDTEKIYAKEVKPLISGVFEGHHATVIAYGARGTGKTSTIQGTIEKPGLASLSMNELLLMAKEKGKSIFISYYEVHVDHVYDLLDPKRPTVLVLDNGHGKIQLKGLSQASYSVFAFIPVKSLSDFYELYLGSSSRKQGQKIANESPHRSHRGLIVHISSTNDAASDARSVAKMNFVDMAGYEDARRKSTDGTSLVENSKINKFTYALLNVASALNSNDNHVPYRESKLTRILQESMGGTQSKILMISCLNSSFCQDSIYMANLAARSCQVTKRVASDAIRKIKSSTNSVVHSSLRNQIPKSVSATAKKQTISRSYFSEKKASVSTASSYTIKGRKLFEDATSHLGKRDKEIQLPSASSDCVPLKYEEATSVVDQANPLPCSLKPEEECTSALEKARKYISRFYNAKNTCLIVFSLKIFCISQEFSAAGISSAVETTIAPKDVSNSNHDPGRIIDGMNALSATGDGPNINDGNNCSMINIVDELPVESTPGVTSSTSLSVVQSSDLDKENNGCSTINEDKSPPLSAQLQALSNNWRSVCSSTRACLKVSDNNAPYGLVFTDVTEPQTPTMERSLRVYNEQDVVNPSTPWETFSQRSTGVKKSLVEDYLRFLNTASKEELKKLKGIGEKRATSIIEFRAESPQPFRSLDDLMEIGLSAKQIKEMMKKEVAGRLFN 757
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2028434 2035029 - Cp4.1LG13g02620.1 Cpe13g00262 479460

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00262 757 Pfam Kinesin motor domain 68 340 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cpe13g00262 757 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 362 IPR027417 -
Cpe13g00262 757 PANTHER KINESIN-RELATED 587 746 IPR027640 GO:0003777|GO:0007018
Cpe13g00262 757 Pfam Helix-hairpin-helix motif 694 744 - -
Cpe13g00262 757 Gene3D Kinesin motor domain 8 354 IPR036961 -
Cpe13g00262 757 SMART kinesin_4 21 362 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cpe13g00262 757 SMART HhH1_4 700 719 IPR003583 GO:0003677|GO:0006281
Cpe13g00262 757 Gene3D - 682 754 - -
Cpe13g00262 757 ProSiteProfiles Kinesin motor domain profile. 23 354 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cpe13g00262 757 SUPERFAMILY RuvA domain 2-like 677 751 IPR010994 -
Cpe13g00262 757 PANTHER KINESIN-RELATED 20 421 IPR027640 GO:0003777|GO:0007018
Cpe13g00262 757 PRINTS Kinesin heavy chain signature 256 274 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cpe13g00262 757 PRINTS Kinesin heavy chain signature 305 326 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cpe13g00262 757 PRINTS Kinesin heavy chain signature 105 126 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cpe13g00262 757 PRINTS Kinesin heavy chain signature 224 241 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cpe13g00262 757 PANTHER BNAA09G05100D PROTEIN 20 421 - -
Cpe13g00262 757 PANTHER BNAA09G05100D PROTEIN 587 746 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00262 K10403 KIF22; kinesin family member 22 - csv:101218738 946.806
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00262 Cpe-Chr13:2028434 Cpe02g00191 Cpe-Chr2:993679 2.96E-30 dispersed
Cpe03g00119 Cpe-Chr3:606995 Cpe13g00262 Cpe-Chr13:2028434 3.46E-13 transposed
Cpe13g00262 Cpe-Chr13:2028434 Cpe05g00275 Cpe-Chr5:1532983 1.17E-26 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g714 . Blo15g00172 . . . Bpe07g00933 . . . . . Cma15g01088 . Car15g01000 . . . . . . . . . . Cla01g00444 Cam01g0467 Cec01g0456 Cco01g0478 Clacu01g0466 Cmu01g0444 Cre09g2068 Cone1ag1166 Cone5ag0876 . . . Csa05g00279 Chy09g01230 . . . Bda06g00688 . . . . Bma12g01117 . . Cmo15g01148 . . . . . Cpe13g00262 Bhi12g00497 . . . . . Lcy12g0037 . . . . . . . . . . Cme09g01562
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009133 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00262 Cpe_Chr13 FPKM 7.120352 7.353152 27.852081 27.92835 34.134068 34.179905 38.721073 68.435036 67.961571 69.596085