Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00263 ATGTGGTTATTAAGAAGAAAAGGACCCTCTGGATTTTCGTCCTCTTCCACTGCTGAGGAGGTTACAGACGGAATCGATGGCACTGGTCTCACCGCCATTGTTACAGGAGCATCGAGCGGTATTGGCTCTGAAACTGCGCGTGTTCTTGCCTTACGTGGAGTTCATGTCATTATGGGTGTTAGGAATTTAGAAGCTGGTAGAAATGTCAAAGAAACCATTGTCAATGAGAATCCCTCTGCAAAAATTGATACCATGGAGTTGGATCTTAGCTCCATGGCATCTGTAAGAAAATTTGCCTCAGATTACCAGTCGTCCGGGTTTCCACTTAACATCCTCATTAATAATGCAGGAATAATGGCTACCCCTTTTGGACTTTCAAAAGATAACATAGAACAGCAATTTGCAACAAACCACTTAGGCCATTTCCTTTTGACGGATCTACTTTTGGAAAATATGAAGAAAACTGCTGTTGAAAGTGAGAAAGAAGGTAGAATTGTAAACGTCTCCTCAGAAGCTCATCGTTACACATATCCTGAAGGCATCCAATTCGATGGAATTAACGATGAATCAAGGTACAATAAAATGCAGGCTTATGGCCAATCGAAGTTATCTAATATTCTGCATGCCAATGAACTTACACGACGTTTCAAGGGTGCAGCAACAACCTGCTATCTGGCATTGCATCCACAAGTAAAGGGAGTGAGTGGTGAGAAAGGGCCATCTGGGTTCTCCGCTTCTTCCACAGCTGAAGAAGTTACAGAAGGAATCGATGGGACAGGTCTCACCGCCATTGTTACAGGTGCATCAAGTGGCATTGGCAGTGAAACTGCTCGTGTCCTTGCATTGCGCGGTGTACGTGTCGTAATGGCTGTTAGGAATGTAGCAACTGGTAGGAAGGTCCAAGAAGCCATTGTCAAGGAAAACCCAACTGCCAAAGTTGATACCATGGAGTTGGACTTGAGCTCGATGGCATCTGTTCGGAATTTTGCATCAAATTTCAATTCCTCAGGAGTCATGGCCTCCCCGTTCTTGCTCTCGAAGGACAAGATAGAGTTGCAGTTTGCAACAAACCATGTGGGACATTTTCTTTTGACAAATCTGCTGTTGGAGACATTGAAAAAGACAGCAACAGAAAGCAAAAAAGAAGGAAGGATTGTCAATGTCTCATCGCGACGACACCAATTTTCATATCGTGAAGGCATCCGATTTGACAAAATCAATGATCCATCAGGCTATAATGGTCTTTCTGCATATGGTCAATCAAAGCTTGCTAATATTTTGCATGCTTCCGAACTCGCAAGACAGCTGAAGGAAGAAGGGGTGAATATAACTGCAAATTCACTACATCCTGGAGCCATTCCTACTAATCTATTTCGTTATCACGGCCTCATCAACGGTATCAAATCTTCTACCTTGACATTATCGTCATCTGATCGGTTTCATAAAGCTCTGTATTCAGCTCATTTTTCTTATGTTTTAGAGCATTTGACTACTGTGATTCTTGGTTTTCTTGGCCTTGTGGGTAAACATGTCATGAAGAATGTACAGCAGGGAGCAGCGACGACATGCTATGTTGCATTACATCCGCAAATGAAAGGTATCAGTGGCCAGTATTTTGCTGATGGGAACGTTGCCAAAGCAAGCTCACAAGCTAATGATAGTGAATTGGCAAAGAAACTATGGGACTTCACCCAAAAGTTGATATCCACTGCTTCAGAAAGTTGA 1725 42.9 MWLLRRKGPSGFSSSSTAEEVTDGIDGTGLTAIVTGASSGIGSETARVLALRGVHVIMGVRNLEAGRNVKETIVNENPSAKIDTMELDLSSMASVRKFASDYQSSGFPLNILINNAGIMATPFGLSKDNIEQQFATNHLGHFLLTDLLLENMKKTAVESEKEGRIVNVSSEAHRYTYPEGIQFDGINDESRYNKMQAYGQSKLSNILHANELTRRFKGAATTCYLALHPQVKGVSGEKGPSGFSASSTAEEVTEGIDGTGLTAIVTGASSGIGSETARVLALRGVRVVMAVRNVATGRKVQEAIVKENPTAKVDTMELDLSSMASVRNFASNFNSSGVMASPFLLSKDKIELQFATNHVGHFLLTNLLLETLKKTATESKKEGRIVNVSSRRHQFSYREGIRFDKINDPSGYNGLSAYGQSKLANILHASELARQLKEEGVNITANSLHPGAIPTNLFRYHGLINGIKSSTLTLSSSDRFHKALYSAHFSYVLEHLTTVILGFLGLVGKHVMKNVQQGAATTCYVALHPQMKGISGQYFADGNVAKASSQANDSELAKKLWDFTQKLISTASES 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2035885 2048756 - Cp4.1LG13g02660.1 Cpe13g00263 479461

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00263 574 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 260 546 IPR036291 -
Cpe13g00263 574 Gene3D - 255 572 - -
Cpe13g00263 574 MobiDBLite consensus disorder prediction 1 23 - -
Cpe13g00263 574 PRINTS Glucose/ribitol dehydrogenase family signature 262 279 IPR002347 -
Cpe13g00263 574 PRINTS Glucose/ribitol dehydrogenase family signature 418 437 IPR002347 -
Cpe13g00263 574 PRINTS Glucose/ribitol dehydrogenase family signature 441 458 IPR002347 -
Cpe13g00263 574 PRINTS Glucose/ribitol dehydrogenase family signature 377 393 IPR002347 -
Cpe13g00263 574 PANTHER RETINOL DEHYDROGENASE 217 237 - -
Cpe13g00263 574 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 2 217 - -
Cpe13g00263 574 PANTHER RETINOL DEHYDROGENASE 2 217 - -
Cpe13g00263 574 Pfam short chain dehydrogenase 31 180 IPR002347 -
Cpe13g00263 574 Pfam short chain dehydrogenase 262 392 IPR002347 -
Cpe13g00263 574 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 238 568 - -
Cpe13g00263 574 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 171 IPR002347 -
Cpe13g00263 574 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 418 437 IPR002347 -
Cpe13g00263 574 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 107 118 IPR002347 -
Cpe13g00263 574 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 217 237 - -
Cpe13g00263 574 PANTHER RETINOL DEHYDROGENASE 238 568 - -
Cpe13g00263 574 Gene3D - 22 254 - -
Cpe13g00263 574 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 29 236 IPR036291 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00263 - - - csv:101213775 487.648
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00263 Cpe-Chr13:2035885 Cpe14g00505 Cpe-Chr14:3196950 5.49E-07 dispersed
Cpe13g00263 Cpe-Chr13:2035885 Cpe05g00646 Cpe-Chr5:3947924 2.23E-141 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g720 . Blo15g00173 . . . . . . . . Cma02g01074 . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00121 . . . . . . . . . . . Cmo02g01090 Cmo15g01147 . . . . . Cpe13g00263 Bhi12g00032 . . . . . Lcy12g0040 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000397 4 5 3 4 3 4 5 4 3 4 3 3 5 4 4 6 3 6 5 4 4 4 4 4 5 4 4 5 5 5 126
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00263 Cpe_Chr13 FPKM 24.685032 33.57618 6.118103 3.642216 91.514656 73.689972 101.897102 1.940309 2.048133 2.555537