Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00274 ATGAAGAAAGTGATTCTGAAATTAGATGTTTCTGATGAAAAATCAAAGCAAAAAGCTATGAGCTCTGTTTCTAGTTTAGCAGGAGTGAACTCAATCTCAATGGACATGAAAGAGAAGAAACTGACAGTAACAGGGGATGTAGATCCAGTGATGATAGTGAGCAAACTAAGGAAAATTTGTCACACAGTGATCGTATCAGTTGGACCAGAGAAAGAAGAGAAGAAACCAGAGCCAAAGAAAGAGGAACCAAAGAAGGAAGATCCAAAGAAGGCAGCAGAGGAAAAGAAGAAAGAAGAAGAAAAGCTTGCAGAGATGTTGAAGGCATGGCATGCCAGAAATAACCCCTGTTTTTATCCACCTGTTTTCTATCCTCCTAGAAGCATAAGCATTGAAGAAGATCCAAATGGCTGTGTTATTTCTTAA 423 38.77 MKKVILKLDVSDEKSKQKAMSSVSSLAGVNSISMDMKEKKLTVTGDVDPVMIVSKLRKICHTVIVSVGPEKEEKKPEPKKEEPKKEDPKKAAEEKKKEEEKLAEMLKAWHARNNPCFYPPVFYPPRSISIEEDPNGCVIS 140
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2180576 2182780 + Cp4.1LG13g02690.1 Cpe13g00274 479472

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00274 140 Gene3D - 1 73 - -
Cpe13g00274 140 PANTHER COPPER TRANSPORT PROTEIN FAMILY-RELATED 1 139 - -
Cpe13g00274 140 PANTHER HEAVY METAL-ASSOCIATED DOMAIN PROTEIN 1 139 - -
Cpe13g00274 140 MobiDBLite consensus disorder prediction 67 100 - -
Cpe13g00274 140 SUPERFAMILY HMA, heavy metal-associated domain 1 64 IPR036163 GO:0046872
Cpe13g00274 140 Pfam Heavy-metal-associated domain 9 58 IPR006121 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00274 - - - csv:101215695 153.295
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00630 Cpe-Chr10:3638761 Cpe13g00274 Cpe-Chr13:2180576 1.59E-08 dispersed
Cpe13g00274 Cpe-Chr13:2180576 Cpe17g00374 Cpe-Chr17:2719919 2.72E-15 dispersed
Cpe13g00274 Cpe-Chr13:2180576 Cpe13g00279 Cpe-Chr13:2208922 7.13E-27 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g771 . . . . Bpe03g00262 . Bma10g01255 . . . . Cma15g01070 . . . . . . . . . . . . Cla01g00091 Cam01g0092 Cec01g0092 Cco01g0093 Clacu01g0090 Cmu01g0092 Cre09g2415 . . . . . Csa05g00103 . . Blo07g00372 . . . . . . . . . Cmo15g01127 . . . . . Cpe13g00274 . . . . . . . . . . . . . . . . . Cme09g01936
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000207 7 7 3 10 7 4 5 6 5 3 4 5 6 7 6 6 5 9 5 5 7 5 5 4 6 4 5 12 6 6 175
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00274 Cpe_Chr13 FPKM 10.190107 11.145025 16.253187 15.939776 14.038033 12.656804 13.917194 16.787399 16.780764 16.90159