Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00277 ATGGCGGCCGGAAACAATGACTGGGATCTCTCCGCCGTCGTCCGGAGCTGCAATTCAGCAGCTTACAGGACAACCCCAACTGCCACCGCCGCCACAGAAACCGATTTGTCGTGTCTCGCTTCTTTAACATTCGACGACGATCCAAACGACGTCGCATTCTCCTTTCCCGACATACTTCAACCCCAACAACAAGAACAACAACAACACAACGGCTTCGATGAATTGCACCAAGCTATCTGTTTTCTCCCCAATTCCCTCACCGCCGCCGTCACCATCGCGCCGGAAATTCCCACCGCCACCACAAACCGTTACTTTCAAGAGGAATTTACACCCATTCTGCCGCAGCCGGATCCTGTGGAGGCGGCAGAGACGGCGGCGGCGCTGCAGAATCAACACCACCACCAAATCCAGCCTTCGTTCCCGCCGGAATTCCCAAATTCGTCAATGGTGCAATCTAACATACCCAAATCGAGAAAAAGAAAAAATCAACAGAAGAGAACTGTATGCCATGTTACTGCAGATAATCTCTCAACAGACATGTGGGCTTGGCGTAAATATGGGCAAAAGCCCATTAAAGGATCTCCATATCCAAGAAACTATTACCGTTGCAGCAGCTCAAAAGGGTGTGGGGCCAGAAAGCAAGTTGAACGGAGCAACGCCGATCCCGAATCTTTCATCATCACTTACACCGGCGAACACATTCATCCACGTCCGACTCACCGGAATTGCCTCGCCGGAAGTTCTCGGAACAGGCCACTCTCCTCCGTCACTAACAAAAACCCCACTGGAGATCCCAATCAATCTCTGATCACTACTGCTCTGGTGGGCTCTGGTTCTTCACCGGCTGATTCTCCGATGACACCGTTCAACGATGACTATGGCGGAGGAGACGAGAAAGAGGGAGAGATGTTTGAGGATATGGCGATCGATAGCGATGATGATTACGACGATATTCTGATTCCAAACTTGATGGTGAGAGATGAAATCTTTGCTGGGTTTGATGAGATTCGGAGGCGGCGACCACCATAA 1029 50.92 MAAGNNDWDLSAVVRSCNSAAYRTTPTATAATETDLSCLASLTFDDDPNDVAFSFPDILQPQQQEQQQHNGFDELHQAICFLPNSLTAAVTIAPEIPTATTNRYFQEEFTPILPQPDPVEAAETAAALQNQHHHQIQPSFPPEFPNSSMVQSNIPKSRKRKNQQKRTVCHVTADNLSTDMWAWRKYGQKPIKGSPYPRNYYRCSSSKGCGARKQVERSNADPESFIITYTGEHIHPRPTHRNCLAGSSRNRPLSSVTNKNPTGDPNQSLITTALVGSGSSPADSPMTPFNDDYGGGDEKEGEMFEDMAIDSDDDYDDILIPNLMVRDEIFAGFDEIRRRRPP 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2202479 2203743 + Cp4.1LG13g02760.1 Cpe13g00277 479475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00277 342 MobiDBLite consensus disorder prediction 245 266 - -
Cpe13g00277 342 Gene3D WRKY domain 160 231 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cpe13g00277 342 Pfam WRKY DNA -binding domain 179 235 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe13g00277 342 MobiDBLite consensus disorder prediction 129 167 - -
Cpe13g00277 342 MobiDBLite consensus disorder prediction 129 157 - -
Cpe13g00277 342 SUPERFAMILY WRKY DNA-binding domain 172 238 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cpe13g00277 342 SMART WRKY_cls 177 237 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe13g00277 342 ProSiteProfiles WRKY domain profile. 172 238 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe13g00277 342 PANTHER WRKY TRANSCRIPTION FACTOR 27-RELATED 6 336 - -
Cpe13g00277 342 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 6 336 IPR044810 GO:0003700
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe05g00637 Cpe13g00277 CCT
Cpe05g00637 Cpe13g00277 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01751 Cpe-Chr3:13267612 Cpe13g00277 Cpe-Chr13:2202479 1.54E-16 dispersed
Cpe08g00531 Cpe-Chr8:3446773 Cpe13g00277 Cpe-Chr13:2202479 6.09E-50 dispersed
Cpe09g00709 Cpe-Chr9:6350681 Cpe13g00277 Cpe-Chr13:2202479 1.77E-38 dispersed
Cpe13g00277 Cpe-Chr13:2202479 Cpe19g01184 Cpe-Chr19:7950073 6.82E-38 dispersed
Cpe19g00342 Cpe-Chr19:3007028 Cpe13g00277 Cpe-Chr13:2202479 3.77E-07 dispersed
Cpe13g00277 Cpe-Chr13:2202479 Cpe05g00637 Cpe-Chr5:3893194 8.19E-134 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50391 PF03106 WRKY 3.00E-25 CL0274 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00277 K13425 - cmo:103482922 413.305