Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe13g00277 | ATGGCGGCCGGAAACAATGACTGGGATCTCTCCGCCGTCGTCCGGAGCTGCAATTCAGCAGCTTACAGGACAACCCCAACTGCCACCGCCGCCACAGAAACCGATTTGTCGTGTCTCGCTTCTTTAACATTCGACGACGATCCAAACGACGTCGCATTCTCCTTTCCCGACATACTTCAACCCCAACAACAAGAACAACAACAACACAACGGCTTCGATGAATTGCACCAAGCTATCTGTTTTCTCCCCAATTCCCTCACCGCCGCCGTCACCATCGCGCCGGAAATTCCCACCGCCACCACAAACCGTTACTTTCAAGAGGAATTTACACCCATTCTGCCGCAGCCGGATCCTGTGGAGGCGGCAGAGACGGCGGCGGCGCTGCAGAATCAACACCACCACCAAATCCAGCCTTCGTTCCCGCCGGAATTCCCAAATTCGTCAATGGTGCAATCTAACATACCCAAATCGAGAAAAAGAAAAAATCAACAGAAGAGAACTGTATGCCATGTTACTGCAGATAATCTCTCAACAGACATGTGGGCTTGGCGTAAATATGGGCAAAAGCCCATTAAAGGATCTCCATATCCAAGAAACTATTACCGTTGCAGCAGCTCAAAAGGGTGTGGGGCCAGAAAGCAAGTTGAACGGAGCAACGCCGATCCCGAATCTTTCATCATCACTTACACCGGCGAACACATTCATCCACGTCCGACTCACCGGAATTGCCTCGCCGGAAGTTCTCGGAACAGGCCACTCTCCTCCGTCACTAACAAAAACCCCACTGGAGATCCCAATCAATCTCTGATCACTACTGCTCTGGTGGGCTCTGGTTCTTCACCGGCTGATTCTCCGATGACACCGTTCAACGATGACTATGGCGGAGGAGACGAGAAAGAGGGAGAGATGTTTGAGGATATGGCGATCGATAGCGATGATGATTACGACGATATTCTGATTCCAAACTTGATGGTGAGAGATGAAATCTTTGCTGGGTTTGATGAGATTCGGAGGCGGCGACCACCATAA | 1029 | 50.92 | MAAGNNDWDLSAVVRSCNSAAYRTTPTATAATETDLSCLASLTFDDDPNDVAFSFPDILQPQQQEQQQHNGFDELHQAICFLPNSLTAAVTIAPEIPTATTNRYFQEEFTPILPQPDPVEAAETAAALQNQHHHQIQPSFPPEFPNSSMVQSNIPKSRKRKNQQKRTVCHVTADNLSTDMWAWRKYGQKPIKGSPYPRNYYRCSSSKGCGARKQVERSNADPESFIITYTGEHIHPRPTHRNCLAGSSRNRPLSSVTNKNPTGDPNQSLITTALVGSGSSPADSPMTPFNDDYGGGDEKEGEMFEDMAIDSDDDYDDILIPNLMVRDEIFAGFDEIRRRRPP | 342 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 2202479 | 2203743 | + | Cp4.1LG13g02760.1 | Cpe13g00277 | 479475 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe13g00277 | 342 | MobiDBLite | consensus disorder prediction | 245 | 266 | - | - | |
Cpe13g00277 | 342 | Gene3D | WRKY domain | 160 | 231 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cpe13g00277 | 342 | Pfam | WRKY DNA -binding domain | 179 | 235 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cpe13g00277 | 342 | MobiDBLite | consensus disorder prediction | 129 | 167 | - | - | |
Cpe13g00277 | 342 | MobiDBLite | consensus disorder prediction | 129 | 157 | - | - | |
Cpe13g00277 | 342 | SUPERFAMILY | WRKY DNA-binding domain | 172 | 238 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cpe13g00277 | 342 | SMART | WRKY_cls | 177 | 237 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cpe13g00277 | 342 | ProSiteProfiles | WRKY domain profile. | 172 | 238 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cpe13g00277 | 342 | PANTHER | WRKY TRANSCRIPTION FACTOR 27-RELATED | 6 | 336 | - | - | |
Cpe13g00277 | 342 | PANTHER | WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED | 6 | 336 | IPR044810 | GO:0003700 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe05g00637 | Cpe13g00277 | CCT | |
Cpe05g00637 | Cpe13g00277 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe03g01751 | Cpe-Chr3:13267612 | Cpe13g00277 | Cpe-Chr13:2202479 | 1.54E-16 | dispersed | |
Cpe08g00531 | Cpe-Chr8:3446773 | Cpe13g00277 | Cpe-Chr13:2202479 | 6.09E-50 | dispersed | |
Cpe09g00709 | Cpe-Chr9:6350681 | Cpe13g00277 | Cpe-Chr13:2202479 | 1.77E-38 | dispersed | |
Cpe13g00277 | Cpe-Chr13:2202479 | Cpe19g01184 | Cpe-Chr19:7950073 | 6.82E-38 | dispersed | |
Cpe19g00342 | Cpe-Chr19:3007028 | Cpe13g00277 | Cpe-Chr13:2202479 | 3.77E-07 | dispersed | |
Cpe13g00277 | Cpe-Chr13:2202479 | Cpe05g00637 | Cpe-Chr5:3893194 | 8.19E-134 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
50391 | PF03106 | WRKY | 3.00E-25 | CL0274 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe13g00277 | K13425 | - | cmo:103482922 | 413.305 |