Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00283 ATGGAACAGAAGCACATTTTTCTTTCTGCTTTGGGTGTTGGTGTTGGGGTGGGCCTTGGATTAAGCTCTGGACAAGCTGTTGGCAAATGGGTTGGAGTGAATGCCTCTTCTGAGGTGATTACAGGACAAAAGATTGAACAGGAGCTCACCAGGCAGCTGATTGATGGCAGAAACAGCAATGTCACCTGTGATGAGTTTCCTTATTATCTAAGCGAGAGGACGCGGGTGCTTTTGATGAGTGCTGCATATGTTCATTTGAAGCACTGCGACATCTCGAGGCACACCAGAAACCTTTCACCAGCGAGTCGAGCTATTTTGCTTTCAGGACCAACAGAACTTTACCAGCAGATGCTTGCCAAGGCTCTCGCACATCACTTCGAGTCAAAGTTGCTGTTGTTAGACGTTTCCGACTTTTCCCTAAAGATGCAGAGCAAATATGGCTGTCCCAAGAAAGAATCTTCATTTAAGAGGTCCCTTTCCGAGGTGACATTGGAGCGAATGTCGAGCATTTGGGATTCCTTCTCGATTCTTCCGACAAGTGGGAATACCTGTGGAAACCTAAGAAGGCAAAGCAGTACGACCGACATTCCATCGAGATATACCGAGGGCTCGTCCAATCCTCCAAAACTTCGGAGAAACGCTTCTGCTGCGTCGGATATTAGTAGTATCTCATCAAACTATGCTTCAACAAACCCAGCTTCTGTCAAGCGCACAAATGGTTGGTGTTTTGATGAGAAACTTTTTCTTCAGTCACTTTATAAGGTCTTGATGTCGGTATCAGAAACGAGTTCCATAATTTTGTATCTGAGAGATGTTGAGAGACTTCTTCTTCAGTCACCAAGGATGTACAATCTGTTCCATAGATTTCTGAACAAGCTCTCGGGATCTATTCTAGTACTCGGTTCCCGATTAGTCGATGTCGAAAATGATTGCGGAGATGTTGACAACAGATTGACGAGTTTATTCCGATATAGTGTTGAAATTCGACCCCCTGAAGATGAGAACCATCTTGTCAGCTGGAAAGCTCAATTGGCAGAAGACATGAAGATGATTCAGTTTCAAGATAATAAAAACCACATTGCTGAAGTACTTGCTGCAAATGATCTTGAATGTGATGATCTTGGTTCAATCTGTCATGCAGACACCATGGTTCTCAGTAATTATATCGAAGAAATCGTCGTGTCGGCGATATCGTATCATTTGATGAACAACCGGGATCCCGAATACCGAAACGGAAAACTTTTGATATCTTCCAAGAGTTTATCCCATGGATTGAGTATATTCCAGGAAGGAAATAATGAAGGAAAAGACACTCTAAAGCTAGAGACGAACTCAGAATCATCTAAGGTAGCCCAAAGGGACGAGGCGATTGGGGCAAAGACGGAATCGAAATCTGAAAACCCAGCTGCAGAAAACAGAAATGAGGCAGATAAATCTGTTCCTATAGTGAAAAAAGATGATGAAAATGTACCTCCACAAAAAGCACCTGAAATTCCTCCCGACAACGAATTCGAAAAGCGTATAAGACCCGAGGTTATCCCTGCAAATGAAATTGGGGTGACATTTGAAGACATTGGTTCTATGAATGAGATCAAAGAGTCCTTACAGGAACTAGTTATGCTTCCTCTTCGTCGACCAGACCTCTTTAAAGGAGGGCTTCTTAAACCGTGTCGGGGCATTCTACTTTTCGGCCCTCCTGGAACGGGTAAAACAATGCTAGCAAAGGCCATTGCTAATGAAGCTGGAGCAAGTTTCATCAATGTTTCAATGTCCACAATCACTTCTAAATGGTTTGGGGAAGATGAAAAGAACGTCCGAGCATTGTTCACGCTCGCAGCAAAAGTCTCACCTACGATTATTTTTGTCGATGAAGTTGATAGCATGCTCGGCCAACGGACTAGAGTGGGAGAGCACGAAGCCATGCGGAAGATTAAGAATGAATTCATGTCACACTGGGATGGACTTCTGACTAGAAATGATGAACGAATACTAGTTCTTGCTGCAACAAACCGGCCATTTGACCTCGATGAAGCAATCATTAGGCGATTTGAGCGCAGAATTATGGTTGGTCTTCCGTCTGTGGAGAGCAGGGAAATGATCATGAGAACTCTTCTATCAAAGGAGAAGGCTGAAGATCTTGATTTCAAGGAGCTTGCAACTATGACAGAAGGATACAGTGGAAGTGATCTCAAGAATTTGTGCGTGACCGCAGCTTATCGGCCTGTTCGGGAGCTCTTGCAACAAGAGAGATTGAAGGATTTGATCGAGATCGAGAAAGATAAGGAGAAGGAGGAGACAAAAAATGAGATCGAAATCGAGATCGAGAAGGAGACCAAAAATGATTTGGAAAACACTACAGTTACGAAAGAGGCAGGAAAAGAGGAACAAGTCATCATTCTGAGGCCTTTAAATATGGATGATATGAGGCAGGCCAAAAATCAGGTTGCTGCAAGTTTTGCTTCTGAGGGATCAGTTATGAATGAGTTGAAGCAATGGAATGATTTGTATGGAGAGGGAGGTTCAAGAAAAAAGCAACAGCTTACATACTTCCTATAG 2556 43.39 MEQKHIFLSALGVGVGVGLGLSSGQAVGKWVGVNASSEVITGQKIEQELTRQLIDGRNSNVTCDEFPYYLSERTRVLLMSAAYVHLKHCDISRHTRNLSPASRAILLSGPTELYQQMLAKALAHHFESKLLLLDVSDFSLKMQSKYGCPKKESSFKRSLSEVTLERMSSIWDSFSILPTSGNTCGNLRRQSSTTDIPSRYTEGSSNPPKLRRNASAASDISSISSNYASTNPASVKRTNGWCFDEKLFLQSLYKVLMSVSETSSIILYLRDVERLLLQSPRMYNLFHRFLNKLSGSILVLGSRLVDVENDCGDVDNRLTSLFRYSVEIRPPEDENHLVSWKAQLAEDMKMIQFQDNKNHIAEVLAANDLECDDLGSICHADTMVLSNYIEEIVVSAISYHLMNNRDPEYRNGKLLISSKSLSHGLSIFQEGNNEGKDTLKLETNSESSKVAQRDEAIGAKTESKSENPAAENRNEADKSVPIVKKDDENVPPQKAPEIPPDNEFEKRIRPEVIPANEIGVTFEDIGSMNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMSHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGLPSVESREMIMRTLLSKEKAEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELLQQERLKDLIEIEKDKEKEETKNEIEIEIEKETKNDLENTTVTKEAGKEEQVIILRPLNMDDMRQAKNQVAASFASEGSVMNELKQWNDLYGEGGSRKKQQLTYFL 851
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2228672 2235896 - Cp4.1LG13g02860.1 Cpe13g00283 479481

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00283 851 MobiDBLite consensus disorder prediction 435 501 - -
Cpe13g00283 851 Coils Coil 745 780 - -
Cpe13g00283 851 CDD AAA 558 691 - -
Cpe13g00283 851 Gene3D - 692 775 - -
Cpe13g00283 851 Pfam ATPase family associated with various cellular activities (AAA) 560 690 IPR003959 GO:0005524|GO:0016887
Cpe13g00283 851 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 851 - -
Cpe13g00283 851 ProSitePatterns AAA-protein family signature. 663 682 IPR003960 GO:0005524|GO:0016887
Cpe13g00283 851 MobiDBLite consensus disorder prediction 185 212 - -
Cpe13g00283 851 MobiDBLite consensus disorder prediction 435 492 - -
Cpe13g00283 851 Gene3D - 519 691 IPR027417 -
Cpe13g00283 851 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 1 851 - -
Cpe13g00283 851 SMART AAA_5 556 693 IPR003593 -
Cpe13g00283 851 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 520 778 IPR027417 -
Cpe13g00283 851 Pfam AAA+ lid domain 712 755 IPR041569 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00283 - - - csv:101216426 1436.4
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g00632 Cpe13g00283 CCT
Cpe05g00632 Cpe13g00283 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00643 Cpe-Chr1:3712809 Cpe13g00283 Cpe-Chr13:2228672 0 dispersed
Cpe13g00283 Cpe-Chr13:2228672 Cpe14g00486 Cpe-Chr14:3079211 3.41E-31 dispersed
Cpe13g00283 Cpe-Chr13:2228672 Cpe05g00632 Cpe-Chr5:3863595 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g810 . Blo15g00108 . . . . . . . . . Cma15g01059 . Car15g00982 . Cpe05g00632 . . . . . . . . Cla01g00082 Cam01g0082 Cec01g0083 Cco01g0083 Clacu01g0082 Cmu01g0084 Cre09g2425 . . . Cone15ag0049 . Csa05g00095 Chy09g01399 . . . . . . . . . . . Cmo15g01117 . . . . . Cpe13g00283 Bhi12g00764 . . . . . Lcy12g0068 . . . . . . . Lsi09g00068 . . Cme09g01945
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001190 2 3 2 2 2 2 2 2 2 2 2 2 3 2 2 3 2 5 4 2 3 2 2 2 2 2 2 5 3 4 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00283 Cpe_Chr13 FPKM 11.253061 11.089768 1.969092 2.75757 3.795157 2.640253 3.519094 0.727808 0.924118 1.224795