Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00301 ATGTTCTGTTTCTCTCAAATTCACAAGCAATCAGGCATGACACCAGCTGGTTTGATAATGTTAAGGAAAGCTGCTTGTTACTGTCCTTTTGGTTTGGTCCTCGGTTGGTTGGCTTGCCGGAACATCAGAACACATACACATCCTGAAGTTAGAGCCATACTAGCAACTAGAGAGGAGATTAAGGAAACGTCGTGTGGGAAAAAGCAGAAGATAGCTGAAGTCAAGACTATCGAAAATGCGCCATCAATGTCGACGTGTAAATCTGTTGTTTCAATGGAGGCCCCGTCTCCAATCGCCAAAGTTTTTCCAACAGTTACTCCCATGGCTCCCCCATCATTACTCAACCATGAAAATGCTGAGAAAAGCATTGCTTTGTTCTTTTTTGAGAATAAGCTAGACTTTAGTATAGCTAGATCTTCATCGTACCAGCTAATGATCGATGCAATAGGGAAATGTGGCCTGGGATTTACGGGTCCTTCTGCCGAAACTTTGAAGAGGCTTTGGTGGGAGCAGTTTGGTGACTCGGCGCCCGTGTTACAACGAGTAGCAATACGGATTCTCAGTCAAGTTTGCAGTACTTTCTCTTTCGAAAGGCATTGGAGCACGTTTCAGCAAATTCACTCCGAAAAACGGAATAAGATCGACAAAGAAACTCTCAATGACCTCGTCTACATAAACTACAATCTCAAGTTAGCTAGACAGATGAAAACAAAACCCTTGGAATCTGATCCTATCCAGTTCGACGACATTGATATGACTTCAGAATGGGTAGAGGAAAGCGAAAACCCGAGCCCAACGCAGTGGCTCGACCGATTTGGTTCTTTGGATGGAGGCGACTTGAATACGAGACAGTTCAATGCTGCCTTATTTAGTGCGAGTGACCACATATTTAACCTGTGA 900 44.0 MFCFSQIHKQSGMTPAGLIMLRKAACYCPFGLVLGWLACRNIRTHTHPEVRAILATREEIKETSCGKKQKIAEVKTIENAPSMSTCKSVVSMEAPSPIAKVFPTVTPMAPPSLLNHENAEKSIALFFFENKLDFSIARSSSYQLMIDAIGKCGLGFTGPSAETLKRLWWEQFGDSAPVLQRVAIRILSQVCSTFSFERHWSTFQQIHSEKRNKIDKETLNDLVYINYNLKLARQMKTKPLESDPIQFDDIDMTSEWVEESENPSPTQWLDRFGSLDGGDLNTRQFNAALFSASDHIFNL 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2515528 2519808 - Cp4.1LG13g03050.1 Cpe13g00301 479499

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00301 299 PANTHER HAT TRANSPOSON SUPERFAMILY 172 296 - -
Cpe13g00301 299 PANTHER HAT TRANSPOSON SUPERFAMILY 38 170 - -
Cpe13g00301 299 Pfam hAT family C-terminal dimerisation region 168 229 IPR008906 GO:0046983
Cpe13g00301 299 SUPERFAMILY Ribonuclease H-like 168 232 IPR012337 -
Cpe13g00301 299 PANTHER OSJNBA0013A04.12 PROTEIN 172 296 - -
Cpe13g00301 299 PANTHER OSJNBA0013A04.12 PROTEIN 38 170 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00301 - - - cmax:111471543 277.715
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01303 Cpe-Chr3:10565046 Cpe13g00301 Cpe-Chr13:2515528 2.59E-16 dispersed
Cpe13g00301 Cpe-Chr13:2515528 Cpe13g01104 Cpe-Chr13:8884957 1.31E-16 dispersed
Cpe14g00868 Cpe-Chr14:7156174 Cpe13g00301 Cpe-Chr13:2515528 7.69E-06 dispersed
Cpe13g00301 Cpe-Chr13:2515528 Cpe01g02553 Cpe-Chr1:20837456 6.46E-22 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g860 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe12g00364 . . . . . . . . . . Cpe13g00301 Bhi12g00598 . . Lac11g0122 . . Lcy12g0101 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001826 2 4 2 1 1 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 8 3 1 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00301 Cpe_Chr13 FPKM 9.744382 11.179634 10.029491 11.388732 12.566447 11.064288 11.794312 16.447668 14.519575 18.046225