Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00320 ATGGCGGCGATTTCATGGGTGGAACTCTTAGGAACAATGGGTAGCTTTAGTGATGATGAAGAATGCCCATATTTTGATGCTCAAGAGATCAATGCTCCCTCGATATCTGAATTCAATTGCGATGGTATTGAGGCGGCCATTGATACTCATCCCAGATTCAAAAACTGGGTTGATGGCAGTTTGGTTTATGATGTATGGAACCAAAGCCCCAAGAGTGTTCATGAGCGTCGGAGGAAGTTTTTGAAATGGATGGAGTTGGGATTAGATCAAACTCTTCCTTGTAATGGGAATTCTCTGACTCTGTGGAGTGATTGGAGAGAAGGGGATGGAGGAAGATTGAGGGATAATTCTTGTGCTGAATCCTCTGATTTTGAAGATGTGTTTTGGTCGGGTCGATCTTCGATGTCGTGTTGGTCTAGTGATGATTTTGAATGTTCGGAGATAACTTCAACGAATACCATTATGTATATGGATGATGGGATTAATGGAGAATCTAGCACGAAAAATGGGGATCGAAGCAGCTCTGTTCGGTTCGCTATGGCTGAAGAGCTTGAGGAGCTTGAGGAGACTTCGAGTTCCTCACCATCTTTCCAACAAATGATGAGGATGGAGGCTGAGAGAGCAAACATTCCGTTGCGTACAGAACAACGAGTCAACAAACGTTGGCTTAAGAAATTGCGATCGGCAGCCTGCATTTTTGATAAGTCAACAGGATTGGTGGTTGATGATGATGATGATGATGATGATTCAGCTGCAGGGTCGAGAGTTCGGAGGGTGAAGGTTCGACAGTGCAAGAAGCAATTGAAGGAGCTATCAGCCCTTTATATGGGACAAGATATCAAGGCACATGAAGGTGCTATCTTGACAATGAAGTTTAGTCCTAATGGACAGTATCTTGCTACCGGTGGTGACGACGGGATTGTTAAATTGTGGCAAGTGATTGAAGACGAGAGATCTAATGAATCTGACATCCCCGAAATCGATCCATCTTGCATTTACTTCACGGTGAATCGTCTCTCGGAGTTGAGACCTTTGCTCGTGGAGAAAGAGAAGATGGCTAACGCAATGGTGTTGAGGAAAACATCGGAATCGGCTTGTATAATATTTCCACCGAAAGTCTTCAGGATCTTGGAGAGACCGTTGCACGAGTTCCATGGACATACCGGTGAGATTTTGGATCTCTCTTGGTCAAAAACCAATTATCTTCTGTCATCATCAGTCGATAAAACCGTTCGACTTTGGCGATTGGGATCCAATGATTGTCTCAGAGTTTTTTCACATAGTAATTACGTTACTTGTGTTCATTTCAATCCCATGGATGAAAATTACTTTATCAGTGGTTCAATAGATGGAAAGATCCGTATTTGGGGAATTCCTTGTAGTCAAGTTGTTGATTGGATTGACATTAGGGAAATTGTCACTGCAGTGTCTTATCATCCTGATGGACAGGGAGGAATTGTTGGCTCCATAAACGGTACTTGCCGGTTCTTTAAAGTAATAGGTGATAATAACCTCGAATTAGACGCCACATTATGTTTGTCCAGTAAGAAGAAGTCGCCCAGTAAAAAGATAACGGGGTTTCAGTATTCTGCAGAAGATTCAAGCAGAATAATGGTGAGCTCTGCTGATTCTCGAATCCGAATTATTGAAGGGCTAAATGTGATCCAGAAGTACAAGGGGCCTTGTAATACCGGAAACCAGATGTCTGCATCGTTTACCTCGGATGGGAAACATATTATCTCGGCGAGTGGGGATTCTAATGTATATGTATGGAACTGCAATTATAAGAACGAGTCTGTTATTTCCCCGGTGAAAAAGATTAAGTCGTATGAATATTTCTCCGCCAATGGCACCATTGCAGTACCGTGGTGCGGTTCGAGATGTAACACGGAGGAAAGACGTTTTTCTGGCATGCGGAGGAGTTCTTCTGAAACTTCCCCGCTTCCATCACCCGCGTTTTTCTCTTTAAGCCAAGAGTTATTAGAATCCTTCCCTAAGGGATCTGCAACATGGCCCGAGGAAAAGCTCCCAACTTCGAGCCTACCAACGAAACCATCTATGATGCACAAATCTCGGTATAAATTTCTGAAGTTGTCTTGCCAAAATACATCGAGTTCTCATGCATGGGGTCTGGTCATCGTGACTGCAGGATCGGATGGACGAATCAGGTCGTTTCACAATTATGGGTTGCCTGTACCTGTCTGA 2205 43.58 MAAISWVELLGTMGSFSDDEECPYFDAQEINAPSISEFNCDGIEAAIDTHPRFKNWVDGSLVYDVWNQSPKSVHERRRKFLKWMELGLDQTLPCNGNSLTLWSDWREGDGGRLRDNSCAESSDFEDVFWSGRSSMSCWSSDDFECSEITSTNTIMYMDDGINGESSTKNGDRSSSVRFAMAEELEELEETSSSSPSFQQMMRMEAERANIPLRTEQRVNKRWLKKLRSAACIFDKSTGLVVDDDDDDDDSAAGSRVRRVKVRQCKKQLKELSALYMGQDIKAHEGAILTMKFSPNGQYLATGGDDGIVKLWQVIEDERSNESDIPEIDPSCIYFTVNRLSELRPLLVEKEKMANAMVLRKTSESACIIFPPKVFRILERPLHEFHGHTGEILDLSWSKTNYLLSSSVDKTVRLWRLGSNDCLRVFSHSNYVTCVHFNPMDENYFISGSIDGKIRIWGIPCSQVVDWIDIREIVTAVSYHPDGQGGIVGSINGTCRFFKVIGDNNLELDATLCLSSKKKSPSKKITGFQYSAEDSSRIMVSSADSRIRIIEGLNVIQKYKGPCNTGNQMSASFTSDGKHIISASGDSNVYVWNCNYKNESVISPVKKIKSYEYFSANGTIAVPWCGSRCNTEERRFSGMRRSSSETSPLPSPAFFSLSQELLESFPKGSATWPEEKLPTSSLPTKPSMMHKSRYKFLKLSCQNTSSSHAWGLVIVTAGSDGRIRSFHNYGLPVPV 734
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2785369 2791506 - Cp4.1LG13g03210.1 Cpe13g00320 479518

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00320 734 SUPERFAMILY WD40 repeat-like 279 724 IPR036322 GO:0005515
Cpe13g00320 734 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 384 416 - -
Cpe13g00320 734 PANTHER WD REPEAT DOMAIN 44 18 734 IPR040324 -
Cpe13g00320 734 ProSiteProfiles Trp-Asp (WD) repeats profile. 424 456 IPR001680 GO:0005515
Cpe13g00320 734 ProSiteProfiles Trp-Asp (WD) repeats profile. 569 592 IPR001680 GO:0005515
Cpe13g00320 734 Pfam WD domain, G-beta repeat 420 456 IPR001680 GO:0005515
Cpe13g00320 734 Pfam WD domain, G-beta repeat 379 414 IPR001680 GO:0005515
Cpe13g00320 734 Pfam WD domain, G-beta repeat 280 311 IPR001680 GO:0005515
Cpe13g00320 734 ProSiteProfiles Trp-Asp (WD) repeats profile. 280 321 IPR001680 GO:0005515
Cpe13g00320 734 ProSiteProfiles Trp-Asp (WD) repeats profile. 384 424 IPR001680 GO:0005515
Cpe13g00320 734 PRINTS G protein beta WD-40 repeat signature 402 416 IPR020472 -
Cpe13g00320 734 PRINTS G protein beta WD-40 repeat signature 444 458 IPR020472 -
Cpe13g00320 734 PRINTS G protein beta WD-40 repeat signature 299 313 IPR020472 -
Cpe13g00320 734 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 280 313 - -
Cpe13g00320 734 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 424 456 - -
Cpe13g00320 734 SMART WD40_4 418 457 IPR001680 GO:0005515
Cpe13g00320 734 SMART WD40_4 551 592 IPR001680 GO:0005515
Cpe13g00320 734 SMART WD40_4 459 498 IPR001680 GO:0005515
Cpe13g00320 734 SMART WD40_4 377 415 IPR001680 GO:0005515
Cpe13g00320 734 SMART WD40_4 510 550 IPR001680 GO:0005515
Cpe13g00320 734 SMART WD40_4 273 312 IPR001680 GO:0005515
Cpe13g00320 734 Gene3D - 265 620 IPR015943 GO:0005515
Cpe13g00320 734 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 18 734 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00320 - - - csv:101206156 1201.42
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g00590 Cpe13g00320 CCT
Cpe05g00590 Cpe13g00320 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe10g00884 Cpe-Chr10:4972184 Cpe13g00320 Cpe-Chr13:2785369 7.46E-95 dispersed
Cpe13g00320 Cpe-Chr13:2785369 Cpe19g00356 Cpe-Chr19:3267814 7.07E-85 dispersed
Cpe05g00780 Cpe-Chr5:4844469 Cpe13g00320 Cpe-Chr13:2785369 0 transposed
Cpe13g00320 Cpe-Chr13:2785369 Cpe05g00590 Cpe-Chr5:3577026 1.04E-179 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1012 . Blo15g00080 Bda05g00130 Bda07g01942 Bpe03g00197 Bpe07g01024 Bma10g01307 Bma14g02015 . . Cma02g01133 Cma15g01017 Car02g00936 Car15g00952 . Cpe05g00590 . . . . . . . . Cla01g00031 . Cec01g0028 Cco01g0030 Clacu01g0030 Cmu01g0029 Cre09g2477 Cone1ag0999 Cone5ag0704 . . . . . . Blo07g00327 Blo09g00017 Bda06g00793 Bda15g00789 . Bpe12g00345 Bma08g00392 Bma12g01219 . Cmo02g01161 Cmo15g01081 . . . . . Cpe13g00320 Bhi12g00667 . . . Hepe06g0808 . . . . . . . . . Lsi09g00011 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003050 4 4 3 4 3 0 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 4 1 52
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00320 Cpe_Chr13 FPKM 36.823906 40.907749 0.634124 0.503333 0.0 0.401467 0.418965 0.397771 0.41054 0.319743