Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00321 ATGCTGCAGAAACGAAGAACTCTCGCTCTGAAACCCTCAAGCCGCCATGATTTTGCGTCAGATCACGAGGAATACGACGACGTTTCCTGTCAGAAATGCGGCTCCGGCGACTCTCCGGCTGAGCTTCTTCTCTGCGACAAATGTGATAGAGGGTATCATCTCTTTTGTCTTTCGCCCATCCTCGTTTCCGTCCCCAAGGGATCGTGGTTCTGCCCGACTTGCTCCAACCACAAGAAGCTCCAATCCTTCCCTCTTGTTCAAACTAAAATTGTTGATTTTTTCCGCATCCAACGACCCGTTGACTCTCAAACGGACTTAAACCAAGAGAACCGAAAGAAACGAAGACGAACTGGTAGCTTAGTACTTAGTAAAAAGAGAAGAAAGCTCTTGCCATTTAAGCCGACTGCAGATACCGCGAGACGCTTGGAACAAATGGCATCACTGGCAACAGCATTGACGGCTACAGGCACAGATTTCAGTAACGAGCTTACATATATGCGTGGCATGGCACCAAGGTCTGCAAACTGCGCATCTCTTGAGCACGGAGGAATGCAGGTTCTTCCAAAAGAGGACGTTGAAACCTTAAACTTGTGCAAAAGTATGATGGAAAGAGGAGAATGGCCTCCTCTTATGGTTGTTTTTGATCCTCGAGAAGGGTTTACTGTGGAGGCTGATAGGTTTATAAAGGACTGGACCATAATTACAGAATATACTGGTGATGTTGATTACTTGAGGAATCGAGAACATGATGATGGGGATAGTATGATGACATTACTGTCTGCGACTAACCGATCTAAAAGCCTCGTCATTTGTCCCGACAAACGTAGTAACATTGCCCGTTTTATTAATGGAATCAACAACCACACACCGGATGGTAGGAAAAAGCAAAACCTTAAGTGTGTCAGGTTCAATGTAAATGGTGAATGTAGAGTTCTACTGATTGCAAACAGAGATATATCTAAGGGTGAGAGATTGTATTATGACTACAATGGATATGAGCATGAATACCCCACTGAGCACTTCGTGTAA 1029 44.8 MLQKRRTLALKPSSRHDFASDHEEYDDVSCQKCGSGDSPAELLLCDKCDRGYHLFCLSPILVSVPKGSWFCPTCSNHKKLQSFPLVQTKIVDFFRIQRPVDSQTDLNQENRKKRRRTGSLVLSKKRRKLLPFKPTADTARRLEQMASLATALTATGTDFSNELTYMRGMAPRSANCASLEHGGMQVLPKEDVETLNLCKSMMERGEWPPLMVVFDPREGFTVEADRFIKDWTIITEYTGDVDYLRNREHDDGDSMMTLLSATNRSKSLVICPDKRSNIARFINGINNHTPDGRKKQNLKCVRFNVNGECRVLLIANRDISKGERLYYDYNGYEHEYPTEHFV 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2798011 2800466 - Cp4.1LG13g03180.1 Cpe13g00321 479519

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00321 342 CDD SET_ATXR5_6-like 205 342 - -
Cpe13g00321 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 90 IPR013083 -
Cpe13g00321 342 SUPERFAMILY FYVE/PHD zinc finger 20 80 IPR011011 -
Cpe13g00321 342 PANTHER HISTONE ACETYLTRANSFERASE 3 339 - -
Cpe13g00321 342 SUPERFAMILY SET domain 200 330 IPR046341 -
Cpe13g00321 342 ProSiteProfiles Zinc finger PHD-type profile. 27 77 IPR019787 -
Cpe13g00321 342 Gene3D SET domain 114 342 IPR046341 -
Cpe13g00321 342 ProSitePatterns Zinc finger PHD-type signature. 30 74 IPR019786 -
Cpe13g00321 342 Pfam PHD-finger 30 76 IPR019787 -
Cpe13g00321 342 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR6 3 339 - -
Cpe13g00321 342 CDD PHD_RSF1 30 74 - -
Cpe13g00321 342 Pfam SET domain 255 330 IPR001214 GO:0005515
Cpe13g00321 342 ProSiteProfiles SET domain profile. 208 330 IPR001214 GO:0005515
Cpe13g00321 342 SMART PHD_3 29 75 IPR001965 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00321 K24406 ATXR5_6; [histone H3]-lysine27 N-methyltransferase [EC:2.1.1.369] - csv:101205046 627.091
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g00589 Cpe13g00321 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01065 Cpe-Chr5:7047728 Cpe13g00321 Cpe-Chr13:2798011 9.47E-131 dispersed
Cpe06g00859 Cpe-Chr6:5584602 Cpe13g00321 Cpe-Chr13:2798011 6.42E-06 dispersed
Cpe13g00321 Cpe-Chr13:2798011 Cpe16g00078 Cpe-Chr16:1571677 1.06E-156 dispersed
Cpe14g00278 Cpe-Chr14:1612991 Cpe13g00321 Cpe-Chr13:2798011 1.39E-06 dispersed
Cpe13g00321 Cpe-Chr13:2798011 Cpe05g00589 Cpe-Chr5:3564840 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1011 Blo06g01057 . . . . . . . . . . Cma15g01016 Car02g00937 Car15g00951 . Cpe05g00589 . . . . . . . . Cla01g00030 Cam01g0029 Cec01g0027 Cco01g0029 Clacu01g0029 Cmu01g0028 Cre09g2478 . . . . . . . . . . . Bda15g00790 . Bpe12g00344 Bma08g00393 . . Cmo02g01162 Cmo15g01080 . . . . . Cpe13g00321 Bhi12g00670 . . . Hepe06g0809 . . . . . . . . . Lsi09g00010 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001827 2 3 2 2 2 2 5 2 2 2 2 2 3 2 2 4 2 2 4 2 2 2 2 1 1 2 2 4 1 2 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50394 PF00856 SET 6.40E-05 No_clan Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00321 Cpe_Chr13 FPKM 16.237555 16.213072 35.044209 32.622818 21.728039 24.591877 19.611065 14.264768 14.144752 15.142173