Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00335 ATGGAAGCCACGGCTGCAGCGCGTGGTGCTTCTCTCTCCATGCATTCTCCCCAGCTCTCCCGCCAGGAATGGCGTGCCGTTGCTGACAATCACTCCGCTCGAGATGCCGCCGATGAGGAGCTGGAACGATCAAAGTTGCAATCAGATGAGAGGACTATATATGAGGTGCAGCAAGGAAGGGAACCCCTTGATGTTGACTTCTGTTCAATTTCAATAAATGGGAATCCAGATAATGATATTTTGCAGCGGCGGCTCAATGATGTCGCTAGACAAAGAGAGGATCTTCAACAGATGGAAATTGAACTTAGAGCTCAAGTTATTGCAAGATCAGAAATATTGGAAATGCAGAAGAGTTTTGATGCTCAAATGAAAGAACGCAATAATGCTGCCATCAAGATGCAGGAACAACTTTGTGAAAGAGATCAAGCTATTCACGAATTGGAAAGGAAAATAGAAGATAAAGATAGAGAATTGCAATCAATTAAATTAGACAATGAAGCGGCTTGGGCCAAAGATGATCTTCTGCGGGAACAAGATAAAGAAATAGCAACTTACAGGAGAGAACGTGATCATTCTGAGGCTGAAAGAGCTCAGCAAATGAAACAAATGCATGAACTTCAAGAACACATCCATGAGAAGGAGCGACAGCATCTCGAGTTACAGGAGCAGCATAGGATAGCTCAAGAAGCCATTTTGTACAAAGATGAACAATTGAGGGAAGCCCATTCTTGGATTGCTCGTGTCCAGGAAATGGATGCTTTGCAATCAACTACAAACCACTCCTTACAAGCTGAATTGCGTGAACGAACGGAGCAGTATAACCAGCTATGGGTTGGTTGCCAGCGTCAGTTCGCAGAGATGGAAAGGCTTCATGTGCATGCATTGCAACAACTCCAACTCGAGTTGGCTGATGCAAGGGAAAGAAGTGGGACTTACAATGATGAATCAAATATATCTCAGACAAATTCCAAAGATGTACCACAATATGGACAAACCAATAGTAACCAATTAGGTGGAGCAGCTTCAACTGGAAATAATGGGGCGCTGTCAAGTGGGAATTCAGAAAATGTTCCATCTTTTAATTTGACGGGCAATTCATCCATCCAGACTGACCATGTATCCGGTGTTCCACTGGCTCCATCATCTCTCCTTGGGATGCCACCCTACCTTCCACCTGGGCAGATGGCTGCTTTGCATCCTTTTTTGATGCATCAACCTGGGGTTCCTCATTCTGTACCATCCCAAGTTCCCCAATCTCATATGGGGCATTTTTCTTCATTACCAACTATATCATCCATCCAACCATGGCAGACTGAGCAGATTGTTTCAGAGGGTTCCAATGTATCTGTTCAGAATGAGCTTCAGTCATCTCAAAATGTCCAAAGCATAATGACATCAAATGCTAATTACCCCTATGAGATGACTGATAATGGGCAAGCTCTTGAACCAGATTATCTGGATGTTCATAGCAGAGAGAGAAGAGAACCTGATTCAGGGATTTCATTGTCTTCTGGAGAAACACAGCTTGAGTCAGTGGATAGAGGATACCAAGTTGCCCCCCAACCTGATACGAGCTTGCAACATGTCACCACTCAATTTCATGATGCCCTGAGGATTGGTTCCACTTCTATTCAGCCCAACAATGAAAAGGATCAAAATAGTTTGGGTGCAGGTGATCAAGTTCCTGAGGAGCAAGGGTTAAATGGGGGAAAATTAAGTCCTGCTGTCAGTACATTATCCTCTGATTCTTCCTCCATTCACAATGTAAATGTCAGTGAAATGGTCATCAATGCTTCTGGCTCTGGGGTGGTTGTACCTGAAGCTTTTGTTTCCTCTGGGCCGAAAGCTCCAATGATGGCAGGGAAGACCTCAGAACCTGCCCTTCTGGATGAAAGAGCATTATTGGCTTGCATTGTTCGCACTATTCCAGCTGGTGGTAGAATTCAAATAAGTTCAACACTGCCAAATAGGCTGTGCAAGATGCTTGCACCTTTACACTGGCGTGATTATGAGAAGAAGTATGGTAAGCTCGAAGATTTTGTAGCTGGTCACCCTGAATTATTTGTGATTGAGGGAGATTATATTCAGCTTCGTGAAGGAGCACAGAAGACAATAGCAGCTACTGCAGCTTTTGCTAAGGTTGCCGCCGCAGCTGCAGCTTCATCTCATTATTCATCACATTTGCCTTCTGTTGCTATGACCCCAATGGCTCATACTAATCGGTCAAAGAGGATTCCATCTTCTGATTCAAAAAACATGAAAGCCGAGAAGACTTCTGTTTTTACTCCAAATATGCACAAGGATTCTCCTCAGGGCACACAAATGAAGAATCAACCTAAAAATGGGTTTCATTCTGCTGCTGGTGGAGGTCTAGTAAACATGAAACTTTATACAAGACCAAAGGATAATCGTGAACTGAACGTCTCAGAAGCCAAGCCTGGTGAATCATCTGTGTTTTTGGGGTTTGAAAATGGGGCTGCTGTTGATAGAACATCAAGTGGGAGCAGTCAAAGCTTACCTTCAACTGATGGGAGGTCTAGTGCCAATTTTTCTGGGAAACATCAGGGCAGAGATTATATGGAATGTGCTCAAATCTTATGGCTCAATGAGGGGTTCTGGAGGAAAGGATCGGATAATACTGAGACGTTGAAGCAGAAAATCGTCCAGTTTTGA 2673 43.88 MEATAAARGASLSMHSPQLSRQEWRAVADNHSARDAADEELERSKLQSDERTIYEVQQGREPLDVDFCSISINGNPDNDILQRRLNDVARQREDLQQMEIELRAQVIARSEILEMQKSFDAQMKERNNAAIKMQEQLCERDQAIHELERKIEDKDRELQSIKLDNEAAWAKDDLLREQDKEIATYRRERDHSEAERAQQMKQMHELQEHIHEKERQHLELQEQHRIAQEAILYKDEQLREAHSWIARVQEMDALQSTTNHSLQAELRERTEQYNQLWVGCQRQFAEMERLHVHALQQLQLELADARERSGTYNDESNISQTNSKDVPQYGQTNSNQLGGAASTGNNGALSSGNSENVPSFNLTGNSSIQTDHVSGVPLAPSSLLGMPPYLPPGQMAALHPFLMHQPGVPHSVPSQVPQSHMGHFSSLPTISSIQPWQTEQIVSEGSNVSVQNELQSSQNVQSIMTSNANYPYEMTDNGQALEPDYLDVHSRERREPDSGISLSSGETQLESVDRGYQVAPQPDTSLQHVTTQFHDALRIGSTSIQPNNEKDQNSLGAGDQVPEEQGLNGGKLSPAVSTLSSDSSSIHNVNVSEMVINASGSGVVVPEAFVSSGPKAPMMAGKTSEPALLDERALLACIVRTIPAGGRIQISSTLPNRLCKMLAPLHWRDYEKKYGKLEDFVAGHPELFVIEGDYIQLREGAQKTIAATAAFAKVAAAAAASSHYSSHLPSVAMTPMAHTNRSKRIPSSDSKNMKAEKTSVFTPNMHKDSPQGTQMKNQPKNGFHSAAGGGLVNMKLYTRPKDNRELNVSEAKPGESSVFLGFENGAAVDRTSSGSSQSLPSTDGRSSANFSGKHQGRDYMECAQILWLNEGFWRKGSDNTETLKQKIVQF 890
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2997805 3005296 + Cp4.1LG13g03290.1 Cpe13g00335 479533

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00335 890 Coils Coil 175 230 - -
Cpe13g00335 890 Coils Coil 295 315 - -
Cpe13g00335 890 MobiDBLite consensus disorder prediction 541 559 - -
Cpe13g00335 890 MobiDBLite consensus disorder prediction 490 511 - -
Cpe13g00335 890 MobiDBLite consensus disorder prediction 829 853 - -
Cpe13g00335 890 PANTHER OS08G0543600 PROTEIN 14 857 - -
Cpe13g00335 890 MobiDBLite consensus disorder prediction 735 788 - -
Cpe13g00335 890 MobiDBLite consensus disorder prediction 752 781 - -
Cpe13g00335 890 PANTHER OS08G0543600 PROTEIN 14 857 - -
Cpe13g00335 890 MobiDBLite consensus disorder prediction 307 368 - -
Cpe13g00335 890 MobiDBLite consensus disorder prediction 1 46 - -
Cpe13g00335 890 MobiDBLite consensus disorder prediction 829 854 - -
Cpe13g00335 890 Coils Coil 78 105 - -
Cpe13g00335 890 Coils Coil 144 164 - -
Cpe13g00335 890 MobiDBLite consensus disorder prediction 11 25 - -
Cpe13g00335 890 MobiDBLite consensus disorder prediction 27 46 - -
Cpe13g00335 890 MobiDBLite consensus disorder prediction 312 368 - -
Cpe13g00335 890 MobiDBLite consensus disorder prediction 541 583 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00335 - - - csv:101218478 1501.11
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g00579 Cpe13g00335 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00335 Cpe-Chr13:2997805 Cpe05g00579 Cpe-Chr5:3508536 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g982 Blo06g01050 Blo15g00076 . . . Bpe07g01028 . . . . Cma02g01147 Cma15g01000 Car02g00948 Car15g00935 . Cpe05g00579 . . . . . . . . Cla01g00014 . . Cco01g0015 Clacu01g0015 Cmu01g0015 . Cone1ag1013 Cone5ag0720 . . . Csa05g00002 Chy09g01478 . . . Bda06g00796 Bda15g00797 . . Bma08g00399 Bma12g01223 . Cmo02g01178 Cmo15g01064 . . . . . Cpe13g00335 Bhi12g00691 . . . Hepe06g0825 . . . . . . . . . . . . Cme09g02026
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004264 2 4 2 2 2 0 2 1 0 1 1 1 1 1 1 2 1 2 2 0 1 1 1 1 1 0 1 5 2 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00335 Cpe_Chr13 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0