Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00339 ATGGGCGAGGCCGTGATTGTCAGCTCTGCAGAGAGTATGGGCACCCATAAACCCCTCACAGATGCCACCTCAACTGGAGTGTTTAACTGGGACCCATTTCTGCCCAACATCATGCTCAGGGTCTTGCTCGTCGAAGCCGACGATTCCACTCGGCACATTATCACCGCCCTTCTCCGCAAGTGCTGCTACCGAGTGGCTGCTGTTCCTGATGGCTTAAAAGCTTGGGAGGTTCTCAAAGAAAGGCCTCGTAGTGTAGATCTTATTTTGGCGGAAATTGAATTGCCATCCATCTCTGGCTTTTCTCTGCTCACTTTGATCATGGAGCACGAGATTTGCAAGAACATTCCTGTTATAATGATGTCATCTCAAGATTCTATCAGCACTGTTTATACATCCATGATGAAAGGTGCAGCAGATTATCTTGTGAAGCCCTTGAGGAGAAATGAGCTGAGGAATCTGTGGCAACATGTTTGGAGAAGACAAGCATCATCCATTCAAGAAAAGGTTGAACTCACTTCAGAAAATGAGACTGCAAGCAATCACTCAACTGGGTATAACAAAAACATTGAGAAAGGGACTGATACTCAGGTAGACTTCGAGGCTAGAAGTAAGATGCAGGAAAATTCAGAGTCTAGGCAGGGAAAAGCATCTCCCAAGAATTTAAAGCTACAGAAAGATGAACATCACATAAATTTGAGTCAAAGATTGGTTATGCACGAAAATGAAGCTGGAGGAGGATTGGCACCAATTACACTAAGCATGGGTATTGAGCCAATCAATGATGGGAGAAGTCCTAATATTGGCAGTGAAGCAGGTGAGAATAAGGATTTGCTTGGCAACCCATCCAGAGATGCCACTGCCTTGAATCATCATAACTACCAACAAAGTTCTCCTTCCAACAATTTCGGCTCTGCTCTTCATTTGGATCTTTCCCTGAGAAGATGTCAACCTAATGATTTTGAGGAACGTGTTGCAGAAGGACGGGCTACCCTCAAACATTCTAGTGCTTCAGCTTTTACGAGATACACTTTCAGGCCATTGCAGCAAACATTAGAAGCAAAATCAAGCAGTATCTATGACGAACAAAAGGAATCTGGAAGCAATCCCGAGCATATTGGAAGTATTGCTGCTACTTCTACTTCTGATACAATTAATCCCACGCCAAGATCAAGTACTTCACACACCGTAATCCCTCTTCAAGTTTCAGTCAAAAACTCGGGCTATAGCTCTTTACCTTCCCCCAAGTTCTGCACACAAGGGGGTACCCCATCGTTTCCATGCCCAACTTCAGTCACTCATCCAGAACTTGGAAAACAAACGGTTTATCCCTTAAACCTTGAGATTCATAATTTGGAGCAATTTCTGAACCAGTATCACAACGTAAGCAGTACAACAAGCAGAAAGATAGAAAACTCAGGGCAGTCTACAGAAAATCAAGGCCATATATCGCCTACCACCGATCACAGTGCAAACGGTAGCCTATATGGTGGTAGTACTGCTCATGTTAGAAGCATGGGATATCCTAGCAGCTGTGGAAACAACAGCAATGTCGATTGCATCGGCATTGCAACAGTTACATCCGAGAGCAGAAATGAAGAAGCTTTGTTTTCTCAAGGAGGAGGAGATTCTCACCGATTCGGTCAAAGAGAAGCAGCTCTATCGAAGTTCCGACTCAAACGAAAAAATAGATGTTACGAGAAAAAGGTGCGTTATGAGAGCAGGAAAAAGCTGGCTGAGCAGCGTCCTAGAGTGAAGGGACAATTTGTTCGTAGAGTATACACTGATGCAGAACCCAACACCAATAATACATACAACGCTTAG 1821 44.1 MGEAVIVSSAESMGTHKPLTDATSTGVFNWDPFLPNIMLRVLLVEADDSTRHIITALLRKCCYRVAAVPDGLKAWEVLKERPRSVDLILAEIELPSISGFSLLTLIMEHEICKNIPVIMMSSQDSISTVYTSMMKGAADYLVKPLRRNELRNLWQHVWRRQASSIQEKVELTSENETASNHSTGYNKNIEKGTDTQVDFEARSKMQENSESRQGKASPKNLKLQKDEHHINLSQRLVMHENEAGGGLAPITLSMGIEPINDGRSPNIGSEAGENKDLLGNPSRDATALNHHNYQQSSPSNNFGSALHLDLSLRRCQPNDFEERVAEGRATLKHSSASAFTRYTFRPLQQTLEAKSSSIYDEQKESGSNPEHIGSIAATSTSDTINPTPRSSTSHTVIPLQVSVKNSGYSSLPSPKFCTQGGTPSFPCPTSVTHPELGKQTVYPLNLEIHNLEQFLNQYHNVSSTTSRKIENSGQSTENQGHISPTTDHSANGSLYGGSTAHVRSMGYPSSCGNNSNVDCIGIATVTSESRNEEALFSQGGGDSHRFGQREAALSKFRLKRKNRCYEKKVRYESRKKLAEQRPRVKGQFVRRVYTDAEPNTNNTYNA 606
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3053370 3059278 + Cp4.1LG13g03380.1 Cpe13g00339 479537

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00339 606 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR5 23 583 - -
Cpe13g00339 606 MobiDBLite consensus disorder prediction 193 209 - -
Cpe13g00339 606 PANTHER TWO-COMPONENT RESPONSE REGULATOR 23 583 IPR045279 GO:0009736
Cpe13g00339 606 SUPERFAMILY CheY-like 38 165 IPR011006 -
Cpe13g00339 606 Pfam CCT motif 549 591 IPR010402 GO:0005515
Cpe13g00339 606 CDD psREC_PRR 41 144 - -
Cpe13g00339 606 MobiDBLite consensus disorder prediction 261 286 - -
Cpe13g00339 606 Gene3D - 39 242 - -
Cpe13g00339 606 Pfam Response regulator receiver domain 41 152 IPR001789 GO:0000160
Cpe13g00339 606 MobiDBLite consensus disorder prediction 169 226 - -
Cpe13g00339 606 MobiDBLite consensus disorder prediction 169 192 - -
Cpe13g00339 606 ProSiteProfiles Response regulatory domain profile. 40 158 IPR001789 GO:0000160
Cpe13g00339 606 ProSiteProfiles CCT domain profile. 549 591 IPR010402 GO:0005515
Cpe13g00339 606 SMART REC_2 39 154 IPR001789 GO:0000160
Cpe13g00339 606 MobiDBLite consensus disorder prediction 465 497 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00339 K12130 PRR5; pseudo-response regulator 5 - csv:101209788 883.248
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe05g00576 Cpe13g00339 CCT
Cpe05g00576 Cpe13g00339 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00339 Cpe-Chr13:3053370 Cpe19g00394 Cpe-Chr19:3519895 2.95E-17 dispersed
Cpe13g00339 Cpe-Chr13:3053370 Cpe03g01835 Cpe-Chr3:13677288 2.11E-90 wgd
Cpe13g00339 Cpe-Chr13:3053370 Cpe05g00576 Cpe-Chr5:3487535 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g961 . . Bda05g00143 Bda07g01959 Bpe03g00223 . Bma10g01321 Bma14g02030 . . . Cma15g00995 Car02g00951 . . Cpe05g00576 . . . . . . . . Cla01g00007 Cam01g0007 Cec01g0006 Cco01g0008 Clacu01g0008 Cmu01g0008 Cre09g2497 Cone1ag1021 Cone5ag0728 . . . Csa05g00009 Chy09g01471 . Blo07g00314 . . . . . . . . Cmo02g01182 Cmo15g01055 . . . . . Cpe13g00339 Bhi12g00702 . . . Hepe06g0835 . . . . . . . . . . . . Cme09g02020
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe11g00049 . 54 258 Response Regulator Gene Family AT3G16857 51.8 3.2e-52 203.8
Cpe18g00551 CST 59 319 Response Regulator Gene Family AT3G16857 53.3 7.5e-49 192.6
Cpe06g00305 . 1 317 Response Regulator Gene Family AT4G31920 58.8 2.1e-87 320.5
Cpe04g01239 CST 18 399 Response Regulator Gene Family AT4G31920 52.6 1.5e-85 314.3
Cpe18g00551 CST 18 317 Response Regulator Gene Family AT4G31920 58.3 4.9e-76 282.7
Cpe12g00300 CCT,CST,ECH 41 320 Response Regulator Gene Family AT4G31920 51.7 2.1e-71 267.3
Cpe17g00047 CCT,CST,ECH 25 300 Response Regulator Gene Family AT4G31920 51.6 4.4e-69 259.6
Cpe08g00165 CCT,CST,ECH 19 270 Response Regulator Gene Family AT4G31920 54.9 7.6e-69 258.8
Cpe03g01344 CCT,CST,ECH 16 290 Response Regulator Gene Family AT4G31920 50.7 7.8e-66 248.8
Cpe11g00049 . 13 261 Response Regulator Gene Family AT4G31920 52.0 7.3e-64 242.3
Cpe06g00305 . 93 256 Response Regulator Gene Family AT1G67710 52.9 3.9e-39 159.8
Cpe08g00165 CCT,CST,ECH 99 261 Response Regulator Gene Family AT1G67710 52.7 6.6e-39 159.1
Cpe06g00305 . 1 349 Response Regulator Gene Family AT2G25180 62.0 6.9e-100 362.1
Cpe04g01239 CST 16 403 Response Regulator Gene Family AT2G25180 53.3 1.4e-97 354.4
Cpe18g00551 CST 16 316 Response Regulator Gene Family AT2G25180 59.8 3.4e-75 280.0
Cpe12g00300 CCT,CST,ECH 41 298 Response Regulator Gene Family AT2G25180 56.7 6.5e-74 275.8
Cpe03g01344 CCT,CST,ECH 8 310 Response Regulator Gene Family AT2G25180 51.3 1.4e-73 274.6
Cpe17g00047 CCT,CST,ECH 27 300 Response Regulator Gene Family AT2G25180 54.5 7.1e-73 272.3
Cpe11g00049 . 13 258 Response Regulator Gene Family AT2G25180 54.8 2.6e-67 253.8
Cpe07g00041 . 11 270 Response Regulator Gene Family AT2G25180 51.9 3.8e-66 250.0
Cpe12g00300 CCT,CST,ECH 102 337 Response Regulator Gene Family AT2G01760 50.6 4.4e-53 205.7
Cpe08g00165 CCT,CST,ECH 79 308 Response Regulator Gene Family AT2G01760 50.4 7.5e-53 204.9
Cpe11g00049 . 74 261 Response Regulator Gene Family AT2G01760 51.0 2.7e-47 186.4
Cpe04g01239 CST 79 288 Response Regulator Gene Family AT2G01760 53.5 2.8e-44 176.4
Cpe06g00305 . 8 314 Response Regulator Gene Family AT5G58080 56.9 3.5e-78 290.0
Cpe12g00300 CCT,CST,ECH 41 285 Response Regulator Gene Family AT5G58080 56.1 1.4e-66 251.5
Cpe18g00551 CST 15 329 Response Regulator Gene Family AT5G58080 51.9 5.8e-65 246.1
Cpe11g00049 . 11 260 Response Regulator Gene Family AT5G58080 51.0 4.6e-62 236.5
Cpe12g00300 CCT,CST,ECH 41 265 Response Regulator Gene Family AT4G16110 66.5 2.2e-78 290.8
Cpe08g00165 CCT,CST,ECH 20 241 Response Regulator Gene Family AT4G16110 66.7 2.4e-77 287.3
Cpe17g00047 CCT,CST,ECH 26 262 Response Regulator Gene Family AT4G16110 62.9 1.0e-75 282.0
Cpe03g01344 CCT,CST,ECH 12 261 Response Regulator Gene Family AT4G16110 61.1 8.5e-75 278.9
Cpe06g00305 . 11 234 Response Regulator Gene Family AT4G16110 59.5 1.8e-61 234.6
Cpe11g00049 . 12 237 Response Regulator Gene Family AT4G16110 54.0 2.5e-58 224.2
Cpe04g01239 CST 17 249 Response Regulator Gene Family AT4G16110 54.7 3.6e-57 220.3
Cpe07g00041 . 10 249 Response Regulator Gene Family AT4G16110 51.0 2.0e-55 214.5
Cpe18g00551 CST 5 290 Response Regulator Gene Family AT4G16110 52.6 1.4e-53 208.4
Cpe02g00336 . 12 138 Response Regulator Gene Family AT4G16110 70.9 5.7e-47 186.4
Cpe07g01132 . 18 284 Response Regulator Gene Family AT4G16110 50.9 2.8e-46 184.1
Cpe18g00823 . 7 172 Response Regulator Gene Family AT3G48100 65.3 3.9e-54 208.4
Cpe01g01415 . 29 162 Response Regulator Gene Family AT3G48100 70.9 1.7e-49 193.0
Cpe01g01415 . 1 175 Response Regulator Gene Family AT1G59940 64.8 2.5e-56 216.5
Cpe18g00823 . 7 148 Response Regulator Gene Family AT1G59940 66.0 3.7e-47 186.0
Cpe01g01205 . 9 161 Response Regulator Gene Family AT1G59940 56.9 1.5e-37 154.1
Cpe01g01415 . 16 199 Response Regulator Gene Family AT1G10470 64.1 1.6e-55 213.4
Cpe18g00823 . 21 148 Response Regulator Gene Family AT1G10470 71.9 6.8e-46 181.4
Cpe18g00823 . 7 172 Response Regulator Gene Family AT3G48100 65.3 3.9e-54 208.4
Cpe01g01415 . 29 162 Response Regulator Gene Family AT3G48100 70.9 1.7e-49 193.0
Cpe18g00823 . 24 172 Response Regulator Gene Family AT5G62920 68.5 2.0e-50 196.1
Cpe01g01415 . 25 175 Response Regulator Gene Family AT5G62920 66.9 5.5e-48 188.0
Cpe18g00823 . 23 171 Response Regulator Gene Family AT1G19050 68.2 2.3e-50 196.1
Cpe01g01415 . 24 185 Response Regulator Gene Family AT1G19050 58.9 4.9e-45 178.3
Cpe01g01205 . 3 165 Response Regulator Gene Family AT2G41310 61.6 4.8e-46 181.8
Cpe01g01415 . 25 158 Response Regulator Gene Family AT2G41310 58.2 3.9e-40 162.2
Cpe03g00456 . 40 168 Response Regulator Gene Family AT2G41310 59.1 7.4e-39 157.9
Cpe18g00823 . 22 148 Response Regulator Gene Family AT2G41310 60.0 1.3e-38 157.1
Cpe01g01205 . 4 165 Response Regulator Gene Family AT3G57040 62.3 1.6e-47 186.8
Cpe03g00456 . 40 170 Response Regulator Gene Family AT3G57040 62.4 1.8e-43 173.3
Cpe01g01415 . 25 158 Response Regulator Gene Family AT3G57040 58.0 2.2e-41 166.4
Cpe18g00823 . 22 148 Response Regulator Gene Family AT3G57040 60.6 2.0e-39 159.8
Cpe18g00823 . 16 171 Response Regulator Gene Family AT1G74890 69.2 7.0e-52 201.1
Cpe01g01415 . 25 187 Response Regulator Gene Family AT1G74890 60.6 7.5e-46 181.0
Cpe01g01205 . 5 166 Response Regulator Gene Family AT1G74890 54.3 2.9e-37 152.5
Cpe01g01415 . 26 159 Response Regulator Gene Family AT2G40670 54.0 4.6e-38 154.8
Cpe01g01415 . 26 159 Response Regulator Gene Family AT3G56380 53.3 5.1e-39 157.9
Cpe18g00823 . 10 154 Response Regulator Gene Family AT3G56380 56.5 3.3e-38 155.2
Cpe11g00049 . 54 258 Response Regulator Gene Family AT3G16857 51.8 3.2e-52 203.8
Cpe18g00551 CST 59 319 Response Regulator Gene Family AT3G16857 53.3 7.5e-49 192.6
Cpe12g00300 CCT,CST,ECH 41 265 Response Regulator Gene Family AT4G16110 66.5 2.2e-78 290.8
Cpe08g00165 CCT,CST,ECH 20 241 Response Regulator Gene Family AT4G16110 66.7 2.4e-77 287.3
Cpe17g00047 CCT,CST,ECH 26 262 Response Regulator Gene Family AT4G16110 62.9 1.0e-75 282.0
Cpe03g01344 CCT,CST,ECH 12 261 Response Regulator Gene Family AT4G16110 61.1 8.5e-75 278.9
Cpe06g00305 . 11 234 Response Regulator Gene Family AT4G16110 59.5 1.8e-61 234.6
Cpe11g00049 . 12 237 Response Regulator Gene Family AT4G16110 54.0 2.5e-58 224.2
Cpe04g01239 CST 17 249 Response Regulator Gene Family AT4G16110 54.7 3.6e-57 220.3
Cpe07g00041 . 10 249 Response Regulator Gene Family AT4G16110 51.0 2.0e-55 214.5
Cpe18g00551 CST 5 290 Response Regulator Gene Family AT4G16110 52.6 1.4e-53 208.4
Cpe02g00336 . 12 138 Response Regulator Gene Family AT4G16110 70.9 5.7e-47 186.4
Cpe07g01132 . 18 284 Response Regulator Gene Family AT4G16110 50.9 2.8e-46 184.1
Cpe06g00305 . 1 317 Response Regulator Gene Family AT4G31920 58.8 2.1e-87 320.5
Cpe04g01239 CST 18 399 Response Regulator Gene Family AT4G31920 52.6 1.5e-85 314.3
Cpe18g00551 CST 18 317 Response Regulator Gene Family AT4G31920 58.3 4.9e-76 282.7
Cpe12g00300 CCT,CST,ECH 41 320 Response Regulator Gene Family AT4G31920 51.7 2.1e-71 267.3
Cpe17g00047 CCT,CST,ECH 25 300 Response Regulator Gene Family AT4G31920 51.6 4.4e-69 259.6
Cpe08g00165 CCT,CST,ECH 19 270 Response Regulator Gene Family AT4G31920 54.9 7.6e-69 258.8
Cpe03g01344 CCT,CST,ECH 16 290 Response Regulator Gene Family AT4G31920 50.7 7.8e-66 248.8
Cpe11g00049 . 13 261 Response Regulator Gene Family AT4G31920 52.0 7.3e-64 242.3
Cpe06g00305 . 93 256 Response Regulator Gene Family AT1G67710 52.9 3.9e-39 159.8
Cpe08g00165 CCT,CST,ECH 99 261 Response Regulator Gene Family AT1G67710 52.7 6.6e-39 159.1
Cpe06g00305 . 1 349 Response Regulator Gene Family AT2G25180 62.0 6.9e-100 362.1
Cpe04g01239 CST 16 403 Response Regulator Gene Family AT2G25180 53.3 1.4e-97 354.4
Cpe18g00551 CST 16 316 Response Regulator Gene Family AT2G25180 59.8 3.4e-75 280.0
Cpe12g00300 CCT,CST,ECH 41 298 Response Regulator Gene Family AT2G25180 56.7 6.5e-74 275.8
Cpe03g01344 CCT,CST,ECH 8 310 Response Regulator Gene Family AT2G25180 51.3 1.4e-73 274.6
Cpe17g00047 CCT,CST,ECH 27 300 Response Regulator Gene Family AT2G25180 54.5 7.1e-73 272.3
Cpe11g00049 . 13 258 Response Regulator Gene Family AT2G25180 54.8 2.6e-67 253.8
Cpe07g00041 . 11 270 Response Regulator Gene Family AT2G25180 51.9 3.8e-66 250.0
Cpe12g00300 CCT,CST,ECH 102 337 Response Regulator Gene Family AT2G01760 50.6 4.4e-53 205.7
Cpe08g00165 CCT,CST,ECH 79 308 Response Regulator Gene Family AT2G01760 50.4 7.5e-53 204.9
Cpe11g00049 . 74 261 Response Regulator Gene Family AT2G01760 51.0 2.7e-47 186.4
Cpe04g01239 CST 79 288 Response Regulator Gene Family AT2G01760 53.5 2.8e-44 176.4
Cpe06g00305 . 8 314 Response Regulator Gene Family AT5G58080 56.9 3.5e-78 290.0
Cpe12g00300 CCT,CST,ECH 41 285 Response Regulator Gene Family AT5G58080 56.1 1.4e-66 251.5
Cpe18g00551 CST 15 329 Response Regulator Gene Family AT5G58080 51.9 5.8e-65 246.1
Cpe11g00049 . 11 260 Response Regulator Gene Family AT5G58080 51.0 4.6e-62 236.5
Cpe02g01049 . 19 565 Response Regulator Gene Family AT5G61380 50.5 2.2e-141 500.0
Cpe04g01485 . 64 324 Response Regulator Gene Family AT5G61380 60.3 6.7e-82 302.4
Cpe19g00394 . 40 216 Response Regulator Gene Family AT5G60100 70.8 2.5e-61 233.4
Cpe13g00339 CCT,ECH 27 164 Response Regulator Gene Family AT5G60100 57.2 1.7e-41 167.5
Cpe03g01835 . 63 197 Response Regulator Gene Family AT5G60100 60.0 1.4e-40 164.5
Cpe19g00394 . 69 212 Response Regulator Gene Family AT5G24470 56.3 1.4e-41 168.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007665 1 2 1 2 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50396 PF00072 Response_reg 1.40E-19 CL0304 Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00339 Cpe_Chr13 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0