Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00339 ATGGGCGAGGCCGTGATTGTCAGCTCTGCAGAGAGTATGGGCACCCATAAACCCCTCACAGATGCCACCTCAACTGGAGTGTTTAACTGGGACCCATTTCTGCCCAACATCATGCTCAGGGTCTTGCTCGTCGAAGCCGACGATTCCACTCGGCACATTATCACCGCCCTTCTCCGCAAGTGCTGCTACCGAGTGGCTGCTGTTCCTGATGGCTTAAAAGCTTGGGAGGTTCTCAAAGAAAGGCCTCGTAGTGTAGATCTTATTTTGGCGGAAATTGAATTGCCATCCATCTCTGGCTTTTCTCTGCTCACTTTGATCATGGAGCACGAGATTTGCAAGAACATTCCTGTTATAATGATGTCATCTCAAGATTCTATCAGCACTGTTTATACATCCATGATGAAAGGTGCAGCAGATTATCTTGTGAAGCCCTTGAGGAGAAATGAGCTGAGGAATCTGTGGCAACATGTTTGGAGAAGACAAGCATCATCCATTCAAGAAAAGGTTGAACTCACTTCAGAAAATGAGACTGCAAGCAATCACTCAACTGGGTATAACAAAAACATTGAGAAAGGGACTGATACTCAGGTAGACTTCGAGGCTAGAAGTAAGATGCAGGAAAATTCAGAGTCTAGGCAGGGAAAAGCATCTCCCAAGAATTTAAAGCTACAGAAAGATGAACATCACATAAATTTGAGTCAAAGATTGGTTATGCACGAAAATGAAGCTGGAGGAGGATTGGCACCAATTACACTAAGCATGGGTATTGAGCCAATCAATGATGGGAGAAGTCCTAATATTGGCAGTGAAGCAGGTGAGAATAAGGATTTGCTTGGCAACCCATCCAGAGATGCCACTGCCTTGAATCATCATAACTACCAACAAAGTTCTCCTTCCAACAATTTCGGCTCTGCTCTTCATTTGGATCTTTCCCTGAGAAGATGTCAACCTAATGATTTTGAGGAACGTGTTGCAGAAGGACGGGCTACCCTCAAACATTCTAGTGCTTCAGCTTTTACGAGATACACTTTCAGGCCATTGCAGCAAACATTAGAAGCAAAATCAAGCAGTATCTATGACGAACAAAAGGAATCTGGAAGCAATCCCGAGCATATTGGAAGTATTGCTGCTACTTCTACTTCTGATACAATTAATCCCACGCCAAGATCAAGTACTTCACACACCGTAATCCCTCTTCAAGTTTCAGTCAAAAACTCGGGCTATAGCTCTTTACCTTCCCCCAAGTTCTGCACACAAGGGGGTACCCCATCGTTTCCATGCCCAACTTCAGTCACTCATCCAGAACTTGGAAAACAAACGGTTTATCCCTTAAACCTTGAGATTCATAATTTGGAGCAATTTCTGAACCAGTATCACAACGTAAGCAGTACAACAAGCAGAAAGATAGAAAACTCAGGGCAGTCTACAGAAAATCAAGGCCATATATCGCCTACCACCGATCACAGTGCAAACGGTAGCCTATATGGTGGTAGTACTGCTCATGTTAGAAGCATGGGATATCCTAGCAGCTGTGGAAACAACAGCAATGTCGATTGCATCGGCATTGCAACAGTTACATCCGAGAGCAGAAATGAAGAAGCTTTGTTTTCTCAAGGAGGAGGAGATTCTCACCGATTCGGTCAAAGAGAAGCAGCTCTATCGAAGTTCCGACTCAAACGAAAAAATAGATGTTACGAGAAAAAGGTGCGTTATGAGAGCAGGAAAAAGCTGGCTGAGCAGCGTCCTAGAGTGAAGGGACAATTTGTTCGTAGAGTATACACTGATGCAGAACCCAACACCAATAATACATACAACGCTTAG 1821 44.1 MGEAVIVSSAESMGTHKPLTDATSTGVFNWDPFLPNIMLRVLLVEADDSTRHIITALLRKCCYRVAAVPDGLKAWEVLKERPRSVDLILAEIELPSISGFSLLTLIMEHEICKNIPVIMMSSQDSISTVYTSMMKGAADYLVKPLRRNELRNLWQHVWRRQASSIQEKVELTSENETASNHSTGYNKNIEKGTDTQVDFEARSKMQENSESRQGKASPKNLKLQKDEHHINLSQRLVMHENEAGGGLAPITLSMGIEPINDGRSPNIGSEAGENKDLLGNPSRDATALNHHNYQQSSPSNNFGSALHLDLSLRRCQPNDFEERVAEGRATLKHSSASAFTRYTFRPLQQTLEAKSSSIYDEQKESGSNPEHIGSIAATSTSDTINPTPRSSTSHTVIPLQVSVKNSGYSSLPSPKFCTQGGTPSFPCPTSVTHPELGKQTVYPLNLEIHNLEQFLNQYHNVSSTTSRKIENSGQSTENQGHISPTTDHSANGSLYGGSTAHVRSMGYPSSCGNNSNVDCIGIATVTSESRNEEALFSQGGGDSHRFGQREAALSKFRLKRKNRCYEKKVRYESRKKLAEQRPRVKGQFVRRVYTDAEPNTNNTYNA 606
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3053370 3059278 + Cp4.1LG13g03380.1 Cpe13g00339 479537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00339 606 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR5 23 583 - -
Cpe13g00339 606 MobiDBLite consensus disorder prediction 193 209 - -
Cpe13g00339 606 PANTHER TWO-COMPONENT RESPONSE REGULATOR 23 583 IPR045279 GO:0009736
Cpe13g00339 606 SUPERFAMILY CheY-like 38 165 IPR011006 -
Cpe13g00339 606 Pfam CCT motif 549 591 IPR010402 GO:0005515
Cpe13g00339 606 CDD psREC_PRR 41 144 - -
Cpe13g00339 606 MobiDBLite consensus disorder prediction 261 286 - -
Cpe13g00339 606 Gene3D - 39 242 - -
Cpe13g00339 606 Pfam Response regulator receiver domain 41 152 IPR001789 GO:0000160
Cpe13g00339 606 MobiDBLite consensus disorder prediction 169 226 - -
Cpe13g00339 606 MobiDBLite consensus disorder prediction 169 192 - -
Cpe13g00339 606 ProSiteProfiles Response regulatory domain profile. 40 158 IPR001789 GO:0000160
Cpe13g00339 606 ProSiteProfiles CCT domain profile. 549 591 IPR010402 GO:0005515
Cpe13g00339 606 SMART REC_2 39 154 IPR001789 GO:0000160
Cpe13g00339 606 MobiDBLite consensus disorder prediction 465 497 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe05g00576 Cpe13g00339 CCT
Cpe05g00576 Cpe13g00339 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00339 Cpe-Chr13:3053370 Cpe19g00394 Cpe-Chr19:3519895 2.95E-17 dispersed
Cpe13g00339 Cpe-Chr13:3053370 Cpe03g01835 Cpe-Chr3:13677288 2.11E-90 wgd
Cpe13g00339 Cpe-Chr13:3053370 Cpe05g00576 Cpe-Chr5:3487535 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50396 PF00072 Response_reg 1.40E-19 CL0304 Cpe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00339 K12130 - csv:101209788 883.248