Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00343 ATGGATGCGAGTTCTATAGACGAAAGCAGCGGCAGCGACTCCACCTCCATTTCTCCCGTCACTCCATTACTCTTCCACTCATCCCCGGCGCCTGGGATGCCCCATGAGGCGGAGTCTCGGAAGCTTCCATCTTCCCGTTTCAAAGGAGTGGTCCCCCAGCCCAATGGCCGATGGGGGGCCCAGATTTACGAGAAGCATCAAAGAGTCTGGCTGGGGACATTCAACCAAGAACACCACGCTGCCAACGCCTACGACATCGCTGCCCTCCGCTTCCGTGGGCGCGATGCCGTCACCAACTTCAAATCCCTGGAGGACGACGATGATAATGATGGTATGGAGGGCGAGTTTCTGAAGTCCCACTCCAAGATGGAGATCGTGGACATGCTCCGGAAACACACGTACAATGAGGAGCTGGAGCAGAGGAAGCGGCAGCGTGGGGCCATAGCGGCGGCTAATACGGCTGTCCACCATTCGGGGTCTGATTCGAAGAGGGAAGTGTTGTTTGAGAAAACGGTGACGCCGAGTGACGTGGGGAAGTTGAACCGGCTGGTGATACCGAAGCAGCACGCGGAGAAGAATTTCCCGATGGGGGAGGGGGTGGGTTCAGGGAAAGGAATGCTTCTGAACTTGGAGGATATGGGAGGGAAAGTTTGGCGGTTCCGGTACTCGTATTGGAATAGTAGCCAGAGCTATGTGTTGACTAGGGGGTGGAGCCGGTTCGTGAAAGAGAAGAGTCTCCGAGCCGGGGATGTGGTTCGGTTCCTCCGCTCCACCGGGGCGGATAAGCAGCTTTACATCGATGGAAAGGCGATAAGTGAAGGGGGGGTGAAGGCGATAAGTGAAGGGGGGGTGAAGGCGGTTCATGTGGTCAAGCTTTTTGGAGTCAATATTCTGGAAGTGCCGCTGCCGGTGGGTCGTTGCGGCGGGGAGCCAAAGAACCAAGGGGTATTATTGGAATTGCAACCTTCCAAGAAGCAGAGAATAATCAAAGCTTTGTAA 999 55.66 MDASSIDESSGSDSTSISPVTPLLFHSSPAPGMPHEAESRKLPSSRFKGVVPQPNGRWGAQIYEKHQRVWLGTFNQEHHAANAYDIAALRFRGRDAVTNFKSLEDDDDNDGMEGEFLKSHSKMEIVDMLRKHTYNEELEQRKRQRGAIAAANTAVHHSGSDSKREVLFEKTVTPSDVGKLNRLVIPKQHAEKNFPMGEGVGSGKGMLLNLEDMGGKVWRFRYSYWNSSQSYVLTRGWSRFVKEKSLRAGDVVRFLRSTGADKQLYIDGKAISEGGVKAISEGGVKAVHVVKLFGVNILEVPLPVGRCGGEPKNQGVLLELQPSKKQRIIKAL 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3208495 3209493 - Cp4.1LG13g03410.1 Cpe13g00343 479541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00343 332 SMART B3_2 168 270 IPR003340 GO:0003677
Cpe13g00343 332 Pfam AP2 domain 46 93 IPR001471 GO:0003700|GO:0006355
Cpe13g00343 332 CDD AP2 45 100 IPR001471 GO:0003700|GO:0006355
Cpe13g00343 332 ProSiteProfiles B3 DNA-binding domain profile. 168 270 IPR003340 GO:0003677
Cpe13g00343 332 Pfam B3 DNA binding domain 168 262 IPR003340 GO:0003677
Cpe13g00343 332 ProSiteProfiles AP2/ERF domain profile. 46 101 IPR001471 GO:0003700|GO:0006355
Cpe13g00343 332 MobiDBLite consensus disorder prediction 1 23 - -
Cpe13g00343 332 PANTHER AP2/ERF AND B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR TEM1 33 303 - -
Cpe13g00343 332 MobiDBLite consensus disorder prediction 1 53 - -
Cpe13g00343 332 Gene3D AP2/ERF domain 45 102 IPR036955 GO:0003700|GO:0006355
Cpe13g00343 332 SUPERFAMILY DNA-binding domain 45 101 IPR016177 GO:0003677
Cpe13g00343 332 CDD B3_DNA 167 254 IPR003340 GO:0003677
Cpe13g00343 332 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 33 303 IPR044800 GO:0003700
Cpe13g00343 332 Gene3D - 157 275 IPR015300 -
Cpe13g00343 332 SMART rav1_2 46 107 IPR001471 GO:0003700|GO:0006355
Cpe13g00343 332 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Cpe13g00343 332 PRINTS Ethylene responsive element binding protein signature 83 103 IPR001471 GO:0003700|GO:0006355
Cpe13g00343 332 SUPERFAMILY DNA-binding pseudobarrel domain 166 266 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01350 Cpe-Chr1:8119732 Cpe13g00343 Cpe-Chr13:3208495 6.66E-129 dispersed
Cpe04g01246 Cpe-Chr4:10401412 Cpe13g00343 Cpe-Chr13:3208495 4.84E-55 dispersed
Cpe09g00275 Cpe-Chr9:1629908 Cpe13g00343 Cpe-Chr13:3208495 2.13E-127 dispersed
Cpe13g00343 Cpe-Chr13:3208495 Cpe17g00919 Cpe-Chr17:7125622 3.86E-42 dispersed
Cpe13g00343 Cpe-Chr13:3208495 Cpe01g01766 Cpe-Chr1:13371389 3.73E-169 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50397 PF02362 B3 2.70E-27 CL0405 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00343 K09287 - csv:101206328 463.381