Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe13g00346 | ATGCCTTCTCCTTCCATGGAGGCGCCTGCCCAACAGATCCCTCTCTTACCCTCCCGTCATCCCTCCAACTCTGACGCCTCCACTTCCCCCATCGGCCCCCTCGCTGTTCTCTTCGCTCACGCCACTGGCCGCCGTGGAACTTCTATGGTGGTCCGGGAGACAGCGGCGCGTGAACTTGAAGAGCGCCGCATCGATTGGGGGTATTCCAAGCCGGTGGTGGCTCTTGACATTATGTGGAATTTGGCTTTCGTTTTCGCTTCTCTGGGTGTGCTTATTCACTCGGCCGATGAAAAACCTAACACGCCAATTCGGCTTTGGATTGTCGTTTATGCGGCTCAATGCTTGGTGCACGCTGTGCTTGTGTGGTTTGAATTCAGAAGGAGGAATGCGAGGAGGGCTAGGGATATGGAGACGCAGCATAATGCATATGTAGCTAATGAAAGCGATGAAGAAGATGGTACCCCCTGGAATCTCTCCGGTGTTGCCAAAAGATGTGAGTCAGTGAACACCCTGATATCATTAATTTGGTGGTTGTTTGGCTTTTACTGGGTCGTGGCTGGGGGTAACATCCTAATGCAGAATGCTCCATCTTTATACTGGTTGGCTGTGGTATTTCTGGCATTTGATGTGTTCTTTGCCATCTTTTGTGTTGTTTTGGCATGTTTGATAGGAATTGCTCTCTGTTGCTGCTTGCCTTGCATTATAGCTATTCTTTATGCTGTTGCAGGCCAGGAAGGTGCAACCGATGCTGATTTAAGTATGCTTCCTAAGTATAGATATCAAGTGTCCAATGAGCCTTCTTCCGGGGATGGTTTGATGGTTCCCGTCGAATCTAGCAGCAGACACTTAACGACTGAGCGTGTTCTATTACGCGAGGATGCGGAGTGCTGTATATGCCTTAGTCCTTACGAGAACGGAGCCGAGCTTCATGCTCTTCCATGCAATCACCATTTTCATTATGCGTGTATCACAAAATGGCTGAAGATGAATGCAACATGTCCTCTGTGCAAGTACAACATTCTAAAAAATTGTGAACCCGTGTAA | 1044 | 48.75 | MPSPSMEAPAQQIPLLPSRHPSNSDASTSPIGPLAVLFAHATGRRGTSMVVRETAARELEERRIDWGYSKPVVALDIMWNLAFVFASLGVLIHSADEKPNTPIRLWIVVYAAQCLVHAVLVWFEFRRRNARRARDMETQHNAYVANESDEEDGTPWNLSGVAKRCESVNTLISLIWWLFGFYWVVAGGNILMQNAPSLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGATDADLSMLPKYRYQVSNEPSSGDGLMVPVESSSRHLTTERVLLREDAECCICLSPYENGAELHALPCNHHFHYACITKWLKMNATCPLCKYNILKNCEPV | 347 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 3434254 | 3436352 | + | Cp4.1LG13g03460.1 | Cpe13g00346 | 479544 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe13g00346 | 347 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
| Cpe13g00346 | 347 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 276 | 343 | IPR013083 | - | |
| Cpe13g00346 | 347 | PANTHER | TARGET OF ERK KINASE MPK-1 | 11 | 343 | - | - | |
| Cpe13g00346 | 347 | SMART | ring_2 | 296 | 336 | IPR001841 | - | |
| Cpe13g00346 | 347 | ProSiteProfiles | Zinc finger RING-type profile. | 296 | 337 | IPR001841 | - | |
| Cpe13g00346 | 347 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE RIE1-LIKE | 11 | 343 | - | - | |
| Cpe13g00346 | 347 | SUPERFAMILY | RING/U-box | 283 | 342 | - | - | |
| Cpe13g00346 | 347 | Pfam | Ring finger domain | 295 | 337 | IPR001841 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cpe01g01827 | Cpe13g00346 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe03g00422 | Cpe-Chr3:2365187 | Cpe13g00346 | Cpe-Chr13:3434254 | 2.08E-87 | dispersed | |
| Cpe08g00793 | Cpe-Chr8:6289601 | Cpe13g00346 | Cpe-Chr13:3434254 | 3.88E-103 | dispersed | |
| Cpe10g01093 | Cpe-Chr10:6689812 | Cpe13g00346 | Cpe-Chr13:3434254 | 2.64E-80 | dispersed | |
| Cpe13g00346 | Cpe-Chr13:3434254 | Cpe14g00834 | Cpe-Chr14:6771794 | 1.42E-93 | dispersed | |
| Cpe01g01827 | Cpe-Chr1:15552484 | Cpe13g00346 | Cpe-Chr13:3434254 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe13g00346 | - | K13148 | csv:101211704 | 586.645 |