Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00353 ATGGGGGACGTGAAGGACAAGTTCAAGGGTTTCATGAAAAGGTTCAATAATCCCTTGTCTTCTTCTTCTTCTGCCAGTTTCAAGGGCCAGGGAAGAGTTTTGGGGTCGTCTTCTTCGGGGTCAACTACTTCCTTGCCTACCCGCCCATCGCAAAATCCCATTTCAAAGCCGAAGCCGGTTAATCCATCTTCGGATTCCCCGCTAAATTCTAAGCCCCCGGTTGCAAATTCAATTGCCAGTGCCCAAAACAGGTCAGAGCAATCGAATAAATCCAACCCAGATCGTAATCCGGCCGACGGATTTGATCCGTTTGACTCGTTTATAACATCTGGGAAAAGATCTGGAAATGGGTATTCCTTAAATGTGTTTGAATGTCCGATTTGTGGCCAAAATTACGGGTCTGAAGAAGAGGTTTCGGTGCACGTAGACAGCTGTGTCATCGACAGTGCATCCAAAGGACCAGCAGATCTGTCCACGAACGATGCAGAATCTCTGAGTGAACTGGAGTCTTGCGTTGGCACTTTCTTATCAGGGAATCCGTCACAAAGTTCATTGGATATCGTTCTGAAGCTTTTGAGGAATATAGTTCGGGAACCAGACAATTCAAAGTTTAGGAAGATTCGTCTGAGTAATCCCAAAATTAAGGAGGCAATTGGTGAGGCTGTGGGAGGAGTGGACTTGTTGGAGTTTGTGGGTTTTAAATTGCGAGAGGAAGATGGTGAAATGTGGGCAACCATGGAGGTTCCAACAGCGGAAGAAATTAACATATTAGGTAAGGTAGTGGATTCAATTGACCGCCCAAAGCTTGATGAACAACAGCAGAAACCCAGCACTGCTACTATGGCTACAACTCAGGCTGATGAACTGGTGGAACCAAAGAAAGTAGACAGACAGATTCGGGTATTCTTTGCTGTCCCTGAAAATATTGCAGCCAACATCGAGCTACCGGACTCGTTTTACAATCTCTCTGTTGAAGAGGTTAAAAGAGAAGCTATAATGAGGAAACAAAAGATTGCTGAATCTCAGCTTTTGGTTCCCAAATCATACAAGGAAAAACAGGCAAAAGCTGCTAGGAGGAAGTATACACGAACAGTTATCAGAATTCAATTTCCGGATGGTGTGGTACTTCAAGGTGTTTTTTCTCCTCGGGAGCCAACAAGTGCTCTATATGAGTTTGTGAGCACAGCACTGAAGGAACCCAGTTTGGAATTTGAGTTGATACATCCTGTCGGTGTTAAACGGCGTACGATCGCTCATTTTCCCACGGGAGAGAGAGGTAAAACGCTAGATGATGAGGAGTTGGTCCCTTCAGCTTTGGTCAAGTTTAGACCAATGGAAACAGATTCAGTTGTCTTCACAGGTTTGCGTAATGAACTCCTTGAGATCATTGAACCACTCGTAAGCGGCTCAGCTGTGGCTCCTCCTCCACAACTTTAA 1437 45.16 MGDVKDKFKGFMKRFNNPLSSSSSASFKGQGRVLGSSSSGSTTSLPTRPSQNPISKPKPVNPSSDSPLNSKPPVANSIASAQNRSEQSNKSNPDRNPADGFDPFDSFITSGKRSGNGYSLNVFECPICGQNYGSEEEVSVHVDSCVIDSASKGPADLSTNDAESLSELESCVGTFLSGNPSQSSLDIVLKLLRNIVREPDNSKFRKIRLSNPKIKEAIGEAVGGVDLLEFVGFKLREEDGEMWATMEVPTAEEINILGKVVDSIDRPKLDEQQQKPSTATMATTQADELVEPKKVDRQIRVFFAVPENIAANIELPDSFYNLSVEEVKREAIMRKQKIAESQLLVPKSYKEKQAKAARRKYTRTVIRIQFPDGVVLQGVFSPREPTSALYEFVSTALKEPSLEFELIHPVGVKRRTIAHFPTGERGKTLDDEELVPSALVKFRPMETDSVVFTGLRNELLEIIEPLVSGSAVAPPPQL 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3569584 3572144 + Cp4.1LG13g03540.1 Cpe13g00353 479551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00353 478 SUPERFAMILY PUG domain-like 180 244 IPR036339 -
Cpe13g00353 478 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 468 - -
Cpe13g00353 478 SUPERFAMILY Ubiquitin-like 330 442 IPR029071 -
Cpe13g00353 478 Pfam UBX domain 360 438 IPR001012 GO:0005515
Cpe13g00353 478 Gene3D - 353 444 - -
Cpe13g00353 478 MobiDBLite consensus disorder prediction 1 107 - -
Cpe13g00353 478 SMART ubx_3 356 444 IPR001012 GO:0005515
Cpe13g00353 478 CDD UBX_UBXN6 364 443 - -
Cpe13g00353 478 Gene3D - 177 266 - -
Cpe13g00353 478 ProSiteProfiles UBX domain profile. 359 442 IPR001012 GO:0005515
Cpe13g00353 478 MobiDBLite consensus disorder prediction 15 51 - -
Cpe13g00353 478 CDD PUB 181 266 - -
Cpe13g00353 478 SMART PGNneu 183 250 - -
Cpe13g00353 478 Pfam PUB domain 182 247 IPR018997 -
Cpe13g00353 478 SMART c2hc_5 122 146 IPR006642 GO:0003677|GO:0006281
Cpe13g00353 478 MobiDBLite consensus disorder prediction 57 95 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g01835 Cpe13g00353 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00595 Cpe-Chr11:3562436 Cpe13g00353 Cpe-Chr13:3569584 3.52E-08 dispersed
Cpe13g00353 Cpe-Chr13:3569584 Cpe17g00305 Cpe-Chr17:2068622 5.57E-07 dispersed
Cpe01g02559 Cpe-Chr1:20859724 Cpe13g00353 Cpe-Chr13:3569584 1.09E-08 transposed
Cpe01g01835 Cpe-Chr1:15607781 Cpe13g00353 Cpe-Chr13:3569584 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00353 K14011 - csv:101209321 778.089