Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00355 ATGTCTGAGAACAAGAAATTCCCAAATCAGGTGGCCGTCTGCGGCAGTTCATCTCCCGGCGTTCGAATCGCGGCAGGGCCACCGCACGAGGCCTTATTTCTTGTACTGAGTTATCTTCCTCTATTTGAGATTCTTTCCATGGGCGCAGTCTGCGTATCGCTAAGAGACGCAGTGGAACACGATGTGTTGCCGTGGCTTCACCTCGCTGTCGATCGCCCCTTGAGCTCCCGGCTAAACGATTACATTCTGGAGCGAATCGCCCGAAAGGCCGATGGCCGCCTTCGAACCTTGGCTTTGATCAACTGCTTCAAGATTTCAGATTCTGCACTTCACGAAGTCGTTGAGAACAATCCCCTTCTCACCAAGCTTTATGTACCTGGTTGCACGAGTTTGACTCCTGAGGGAGTGATTCGGGCAGTGGAGACTCTATCACAACATTCTCACAATTTGAATAGCCTAATGATTGGTGGCATTTACAACATAGAGAATGAACACCTTGAAGTCCTCAAGTACCATCTTCTCAAAAACGGATCGCAGCAGCAGCAACAACAACAGCAACAACGTCGTCTGTACCACAAGTACATTGAGGCATGGAAGTTGTTGAGGAACGAATACATGGCAATGATTGATGTAGAAATGTGCCCAAAATGCCAGGAGATAGGGAAAGTTTATGATTGCTCAAGGGAGAGATGCAAGATAAAGCAAGAGCAGAACTCTGGGGCAGAGTGCCGAGGTTGCAGTGGCTGCGTGCCAAGGTGCGAAGAATGTGGGGGATGCGTAGATGGTGATGAAACAGAGGAGGCTGTATGTGCGGGTATCTTGTGCACAAGTTGTTGGCTTCAGCTTCCCAAATGCAACCATTGTAATAGGCCATATTGCACGCGACACCGTCAGAATGTGCTTTATGTACCTGGTTGCACGAGTTTGACTCCTGAGGGAGTGATTCGGGCAGTGGAGACTCTATCACAACATTCTCACAATTTGAATAGCCTAATGATTGGTGGCATTTACAACATAGAGAATGAACACCTTGAAGTCCTCAAGTACCATCTTCTCAAAAACGGATCGCAGCAGCAGCAACAACAACAGCAACAACGTCGTCTGTACCACAAGTACATTGAGGCATGGAAGTTGTTGAGGAACGAATACATGGCAATGATTGATGTAGAAATGTGCCCAAAATGCCAGGAGATAGGGAAAGTTTATGATTGCTCAAGGGAGAGATGCAAGATAAAGCAAGAGCAGAACTCTGGGGCAGAGTGCCGAGGTTGCAGTGGCTGCGTGCCAAGGTGCGAAGAATGTGGGGGATGCGTAGATGGTGATGAAACAGAGGAGGCTGTATGTGCGGGTATCTTGTGCACAAGTTGTTGGCTTCAGCTTCCCAAATGCAACCATTGTAATAGGCCATATTGCACGCGACACCGTCAGAATGTGGTAAGTAGCTCTGCTGCTGGGTTTGTTTGTGAAGTTTGTATTGAAACTTAG 1485 48.01 MSENKKFPNQVAVCGSSSPGVRIAAGPPHEALFLVLSYLPLFEILSMGAVCVSLRDAVEHDVLPWLHLAVDRPLSSRLNDYILERIARKADGRLRTLALINCFKISDSALHEVVENNPLLTKLYVPGCTSLTPEGVIRAVETLSQHSHNLNSLMIGGIYNIENEHLEVLKYHLLKNGSQQQQQQQQQRRLYHKYIEAWKLLRNEYMAMIDVEMCPKCQEIGKVYDCSRERCKIKQEQNSGAECRGCSGCVPRCEECGGCVDGDETEEAVCAGILCTSCWLQLPKCNHCNRPYCTRHRQNVLYVPGCTSLTPEGVIRAVETLSQHSHNLNSLMIGGIYNIENEHLEVLKYHLLKNGSQQQQQQQQQRRLYHKYIEAWKLLRNEYMAMIDVEMCPKCQEIGKVYDCSRERCKIKQEQNSGAECRGCSGCVPRCEECGGCVDGDETEEAVCAGILCTSCWLQLPKCNHCNRPYCTRHRQNVVSSSAAGFVCEVCIET 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3612024 3615308 - Cp4.1LG13g03560.1 Cpe13g00355 479553

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00355 494 SUPERFAMILY F-box domain 28 69 IPR036047 GO:0005515
Cpe13g00355 494 PANTHER MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B 24 299 - -
Cpe13g00355 494 PANTHER F-BOX PROTEIN SKIP28 24 299 - -
Cpe13g00355 494 PANTHER F-BOX PROTEIN SKIP28 297 491 - -
Cpe13g00355 494 Gene3D Ribonuclease Inhibitor 26 182 IPR032675 -
Cpe13g00355 494 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 243 254 IPR017900 -
Cpe13g00355 494 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 421 432 IPR017900 -
Cpe13g00355 494 PANTHER MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B 297 491 - -
Cpe13g00355 494 SUPERFAMILY RNI-like 80 354 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00355 - - - bhj:120092447 487.263
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01595 Cpe-Chr1:9742253 Cpe13g00355 Cpe-Chr13:3612024 1.48E-14 dispersed
Cpe07g00045 Cpe-Chr7:218247 Cpe13g00355 Cpe-Chr13:3612024 4.13E-13 dispersed
Cpe09g00566 Cpe-Chr9:3913525 Cpe13g00355 Cpe-Chr13:3612024 4.07E-14 dispersed
Cpe13g00355 Cpe-Chr13:3612024 Cpe11g00053 Cpe-Chr11:280450 4.94E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g477 Blo01g00768 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0378 Cone9ag0407 . . . . . . . . . Bpe02g01978 Bma01g00480 . . . Cmo15g01018 . Cma15g00971 . Car15g00918 Cpe13g00355 . Bhi12g00929 . . . . . . Cla01g00626 Cam01g0655 Cec01g0647 Cco01g0672 Clacu01g0643 Cmu01g0618 Cre09g1886 Lsi09g00677 . Chy09g00833 Cme09g01365
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013070 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 0 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00355 Cpe_Chr13 FPKM 1.92328 0.0 1.568385 1.932231 2.327935 0.226198 2.243987 0.841311 1.197 0.502101