Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00356 ATGGAGGGAGCGGAAATGGAGCTTGAGCGACGCAGCAAGTTTCTGAATGGGCTTATTTTGAAGAAGAAGGCGGGGGAGCATCAAGAGCACCGCGATCGTCTCAATGTTCGCGTTAGAGCCTCCGATATGCCGTTTCCTCTCCAGAATCGCGCTTTTAGTTGCGCTCGTGAACTTCTTGATTCCATGCCTGGGAAGCTCGATAGCAAACGCCTCGCTCTTGCGCTCAAAAAGGAATTTGATTCGTCCTATGGTCCAGCATGGCATTGCATCGTGGGAACTAGCTTTGGGTCGTATGTAACACATTCTCTGGGTGGGTTCTTGTATTTTTCAATCGATAAAGTTTACATCCTTCTCTTCAAAACGGCAGTGGAGCCTCTGTCTCGTGGAAAATCTTTGAAAGATTGA 405 48.15 MEGAEMELERRSKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAVEPLSRGKSLKD 134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3616021 3618188 - Cp4.1LG13g03550.1 Cpe13g00356 479554

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00356 134 Pfam Dynein light chain type 1 36 121 IPR001372 GO:0007017|GO:0030286
Cpe13g00356 134 PANTHER DYNEIN LIGHT CHAIN 1 127 - -
Cpe13g00356 134 PANTHER DYNEIN LIGHT CHAIN 1 127 IPR001372 GO:0007017|GO:0030286
Cpe13g00356 134 SMART Dynein_light_2 31 121 IPR001372 GO:0007017|GO:0030286
Cpe13g00356 134 SUPERFAMILY DLC 29 121 IPR037177 GO:0007017|GO:0030286
Cpe13g00356 134 Gene3D Protein Inhibitor Of Neuronal Nitric Oxide Synthase; 24 122 IPR037177 GO:0007017|GO:0030286
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00356 K10418 DYNLL; dynein light chain LC8-type - csv:101219841 258.455
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe13g00356 Cpe14g00050 CCT
Cpe01g01836 Cpe13g00356 CCT
Cpe13g00356 Cpe14g00050 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00356 Cpe-Chr13:3616021 Cpe20g00211 Cpe-Chr20:1215832 6.17E-35 dispersed
Cpe01g01836 Cpe-Chr1:15612450 Cpe13g00356 Cpe-Chr13:3616021 4.90E-64 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g476 Blo01g00767 Blo16g00740 Bda01g01803 Bda11g00179 Bpe13g01017 . . . . . . . . Car04g00094 . . Cpe01g01836 . . . . . . . . . . . . . . . . Cone6ag0379 Cone9ag0408 . Csa05g02007 . . . . . Bda11g00179 . Bpe02g01979 Bma01g00479 Bma06g01124 . . Cmo15g01017 . . . Car15g00917 Cpe13g00356 . Bhi12g00928 . . . . . . Cla01g00625 Cam01g0654 Cec01g0646 Cco01g0671 Clacu01g0642 Cmu01g0617 Cre09g1887 Lsi09g00676 . Chy09g00834 Cme09g01366
Vvi16g883 . . . . Bpe03g00182 . . . Cmo16g00068 . . . . . Sed07g0841 . Cpe14g00050 Bhi01g01472 Tan01g0125 Cmetu06g1353 . Hepe07g0077 Mch10g0077 . . . . . . . . Cone1ag0966 Cone5ag0672 . . . . . Cme06g01115 . Blo09g00035 . . . . . . . . . Cma16g00062 . Car16g00056 . . Cpe13g00356 . . . . . . . Cla05g00958 Cam05g1049 Cec05g1054 Cco05g1048 Clacu05g1042 Cmu05g0992 Cre05g1069 . Csa03g02203 Chy06g01234 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007497 2 1 2 2 2 1 2 0 0 1 0 1 1 1 1 1 1 2 2 0 1 1 1 1 1 1 1 1 1 3 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00356 Cpe_Chr13 FPKM 2.182806 1.781229 11.46957 11.075937 44.8895 36.580482 49.127132 7.856118 7.652867 8.592573