Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00358 ATGTCTTGCTCCCAAACCCCATATCCAGACCTCTGCTTCCATTTCATCAACCCGAACCACAACGTACCCACCACCGACGTCCATCAATCTTATAACATCACTCGCTTTCGAAACTCGGCCATTCGAGCTACTTTGAACCAAGCCATGGTGGCCCATCACCACCTTCTCTCTGCCATGGATTTAGCTTCCTTTGACGATGACGACCGAGTGAAATCAGCTTTAATCGACTGTCTGGAACTCTATGAGGATTCAATCACCGAGCTCAATCGCTCGGTGATGAACTCTATGAGGGCCAATTCAATTGACCACTTGACATTGCTAAGTGCTTCATTAGCGAATCATCAAACATGTCGAGATGGGTTTCGAGATTTTGGATTTTCTTCTCATTATTTGAATAATATCATTTTTCCACATCAAATTTTGAGTAATTTCTCGAAATTGATCACCAATTCTCTTGCCATCACCAAGGCCGCTGCCGTGACAGCTACTACTTCTTCCAATCCTCGTAGCCAGCGGCTACTAGCCGGTCATAACTCATCGGAAAAAATGTTGGCGGCAATTTCAGCGGTGGTCGGCGAAGGGTTCATCGCCAAAGACATGACGTTCGAGAACAGGGCAGGAGCAGAGAAGCACCAAGCTGTTTCTCTCCGAACTAACGCCGATCGCTCAATTTTCTACCGATGCAGCTTCAAAGGCTACCAAGACACTCTATACGCCCACTCCAACCGCCATTTCTTCCGTGAATGCCACATCTACGGAACCATCGACTTCATTTTCGGCGATGGCGCCTCTGTATTTCAAAATTGCAACATCTTCGTCAGAAAGCCGATGGAAAACCAGAAGAACACGGTGACGGCGCAGGGGAGGTCCGACCCGAATGAAAACACGGGGAGGAGGTTGGATTCCGGCCACCGGAGTGCCATTTGCAAATGGGTTCTTAAAGCACAGGCAGTTGATAGA 960 48.02 MSCSQTPYPDLCFHFINPNHNVPTTDVHQSYNITRFRNSAIRATLNQAMVAHHHLLSAMDLASFDDDDRVKSALIDCLELYEDSITELNRSVMNSMRANSIDHLTLLSASLANHQTCRDGFRDFGFSSHYLNNIIFPHQILSNFSKLITNSLAITKAAAVTATTSSNPRSQRLLAGHNSSEKMLAAISAVVGEGFIAKDMTFENRAGAEKHQAVSLRTNADRSIFYRCSFKGYQDTLYAHSNRHFFRECHIYGTIDFIFGDGASVFQNCNIFVRKPMENQKNTVTAQGRSDPNENTGRRLDSGHRSAICKWVLKAQAVDR 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3683843 3686090 + Cp4.1LG13g03580.1 Cpe13g00358 479556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00358 320 MobiDBLite consensus disorder prediction 282 301 - -
Cpe13g00358 320 PANTHER PECTINESTERASE 185 300 - -
Cpe13g00358 320 PANTHER PECTINESTERASE INHIBITOR 5-RELATED 185 300 - -
Cpe13g00358 320 PANTHER PECTINESTERASE INHIBITOR 5-RELATED 2 163 - -
Cpe13g00358 320 SUPERFAMILY Pectin lyase-like 179 303 IPR011050 -
Cpe13g00358 320 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 2 156 IPR035513 -
Cpe13g00358 320 CDD PMEI-like_3 2 152 - -
Cpe13g00358 320 TIGRFAM PME_inhib: pectinesterase inhibitor domain 2 156 IPR006501 GO:0004857
Cpe13g00358 320 ProSitePatterns Pectinesterase signature 2. 251 260 IPR033131 -
Cpe13g00358 320 PANTHER PECTINESTERASE 2 163 - -
Cpe13g00358 320 Pfam Pectinesterase 181 301 IPR000070 GO:0030599|GO:0042545
Cpe13g00358 320 Gene3D - 142 303 IPR012334 -
Cpe13g00358 320 SMART PMEI_2 1 154 IPR006501 GO:0004857
Cpe13g00358 320 Pfam Plant invertase/pectin methylesterase inhibitor 2 154 IPR006501 GO:0004857
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00358 Cpe-Chr13:3683843 Cpe14g00042 Cpe-Chr14:223595 8.70E-09 dispersed
Cpe13g00358 Cpe-Chr13:3683843 Cpe05g00601 Cpe-Chr5:3652067 6.88E-07 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00358 - K01051 csv:101219120 223.016