Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00359 ATGCCGCAGAATCAAGCAACCCCCTCTCTCTTTCACCTGCTCTCTGTTTCTTCAATCTCCTTCCCTTTCTTCTCCGCCGTTGCAACTCTTCCAGTCATGGTTCGCTTCAGTGTCACCAGGAAGCAGACCGCCCCTATCGATGGCCAGAAGCCCGGTACTTCTGGCCTCCGCAAGAAGGTTAAAGTATTCATTCAACCAAACTACTTGGAGAATTTTGTTCAGGCAACATTTAATGCATTGACTGCTGAAAAAGTTCGAGTTCATAATTTGTTTCTTATGGGTTCTATCAGTTCATCATTACAAACTCCTAATCTTCAGCTGTTTAGAATTGATGGTGGTCTTGTGCCTGGCCTGACAAAGGCATTAGGGGCTACACTTGTTGTTTCTGGAGATGGACGCTATTATTCAAAGGATGCTATTCAGATTATAACCAAGATGGCTGCAGCAAATGGGGTACGGCGTATTTGGGTTGGTCAAAATGGTTTGCTTTCAACTCCTGCTGTGTCTGCTGTCATACGTGAAAGAGTTGGGGTTGATGGATCCCGATCATCGGGAGCATTTATTTTGACTGCAAGTCACAATCCAGGAGGCCCCAATGAGGATTTTGGGATTAAATACAACATGGAAAATGGTGGCCCTGCTCCAGAAGGAATTACTGATAAGATCTATGAAAACACAAAATCAATAAAGGAGTACTTAATTTCTGAAGATCTACCTAACGTGGATATTTCCGCAATAGGTGTTTCTAGCTTTGGCGGACCTGAAGGACAATTTGACGTTGAAGTTTTTGATTCTGCCAGTGACTATGTGAAGTTAATGAAGTCAATATTTGATTTTGAATCTATCCGCAAGCTTCTATCCTCTCCCAAATTCTCATTCTGTTATGATGCTCTACACGGTGTTGCTGGAGCTTATGCAAAACGTATTTTTGTGGAAGAGCTCGGTGCAAAAGAAAGCTCATTACTGAACTGTGTACCTAAGGAGGACTTTGGAGGAGGTCATCCTGATCCCAATCTTACTTATGCCAAGGAATTGGTTGCTCGTATGGGATTGGGAAAATCAAGCTCTGGACAAGAACCTCCAGAATTTGGTGCTGCTGCTGATGGTGATGCAGATCGCAATATGGTCCTTGGTAAAAGGTTTTTTGTCACTCCTTCAGACTCTGTTGCCATTATTGCTGCTAATGCTGTTGAAGCTATTCCGTACTTCTCTGGTGGTTTGAAGGGTGTCGCCAGGAGCATGCCAACCTCTGCTGCACTAGATGTGGTTGCCAAAAACTTGAACTTGAAGTTTTTTGAGGTGCCCACGGGCTGGAAATTTTTTGGTAATTTAATGGATGCAGGAATGTGCTCCGTCTGTGGGGAAGAGAGTTTTGGAACTGGATCTGACCATATTCGTGAGAAAGATGGAATCTGGGCAGTTTTGGCTTGGTTATCTATTCTTGCTTATAAAAACAAGGCAAACCTTGATAGTGGAAAGCTTGTGACAGTCGAAGACATAGTTCGCCAACACTGGGCCACCTATGGTCGCCATTATTATACTAGATACGATTATGAGAACGTTGACGCTGAAGCAGCAAAGGAACTGATGGCGAATCTGGTGAAGCTGCAATCTTCACTTGCCGAANTTTTTGTAATTATCAAGGGAGTTCGTTCAGATGTTTCAAAGGTTGTCCATGGTGATGAATTTGAGTATAAAGATCCTGTTGATGGTTCCNGAGAACACGTTTTAGTACAAATGACAATTTATATATTATCAATCTTCTTTACATGGTTGCAGGTCTTCCGCCTGTCTGGAACTGGCTCTGAAGGCGCAACTATTCGGCTCTACATTGAGCAATATGAGAAAGATCCATCAAAAACTGGGAGAGATTCTCAGGAAGCTCTCGCTCCTCTGGTGGAAGTTGCTCTTAAGCTCTCAAAAATGCAAGAATTTACCGGCCGATCTGCTCCTACCGTCATTACTTAA 1968 43.24 MPQNQATPSLFHLLSVSSISFPFFSAVATLPVMVRFSVTRKQTAPIDGQKPGTSGLRKKVKVFIQPNYLENFVQATFNALTAEKVRVHNLFLMGSISSSLQTPNLQLFRIDGGLVPGLTKALGATLVVSGDGRYYSKDAIQIITKMAAANGVRRIWVGQNGLLSTPAVSAVIRERVGVDGSRSSGAFILTASHNPGGPNEDFGIKYNMENGGPAPEGITDKIYENTKSIKEYLISEDLPNVDISAIGVSSFGGPEGQFDVEVFDSASDYVKLMKSIFDFESIRKLLSSPKFSFCYDALHGVAGAYAKRIFVEELGAKESSLLNCVPKEDFGGGHPDPNLTYAKELVARMGLGKSSSGQEPPEFGAAADGDADRNMVLGKRFFVTPSDSVAIIAANAVEAIPYFSGGLKGVARSMPTSAALDVVAKNLNLKFFEVPTGWKFFGNLMDAGMCSVCGEESFGTGSDHIREKDGIWAVLAWLSILAYKNKANLDSGKLVTVEDIVRQHWATYGRHYYTRYDYENVDAEAAKELMANLVKLQSSLAEXFVIIKGVRSDVSKVVHGDEFEYKDPVDGSXEHVLVQMTIYILSIFFTWLQVFRLSGTGSEGATIRLYIEQYEKDPSKTGRDSQEALAPLVEVALKLSKMQEFTGRSAPTVIT 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3686568 3696358 - Cp4.1LG13g03590.1 Cpe13g00359 479557

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00359 655 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 268 377 IPR005845 GO:0005975
Cpe13g00359 655 Gene3D - 37 272 - -
Cpe13g00359 655 PANTHER BNAA09G30060D PROTEIN 120 183 - -
Cpe13g00359 655 Gene3D - 491 655 - -
Cpe13g00359 655 PANTHER PHOSPHOHEXOMUTASE FAMILY MEMBER 36 94 IPR045244 GO:0004614|GO:0005975
Cpe13g00359 655 Gene3D - 382 480 - -
Cpe13g00359 655 PANTHER BNAA09G30060D PROTEIN 183 655 - -
Cpe13g00359 655 CDD PGM1 42 655 - -
Cpe13g00359 655 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 385 508 IPR005846 GO:0005975|GO:0016868
Cpe13g00359 655 SUPERFAMILY Phosphoglucomutase, first 3 domains 267 382 IPR016055 GO:0005975|GO:0016868
Cpe13g00359 655 SUPERFAMILY Phosphoglucomutase, first 3 domains 122 297 IPR016055 GO:0005975|GO:0016868
Cpe13g00359 655 SUPERFAMILY Phosphoglucomutase, first 3 domains 369 515 IPR016055 GO:0005975|GO:0016868
Cpe13g00359 655 SUPERFAMILY Phosphoglucomutase, first 3 domains 37 90 IPR016055 GO:0005975|GO:0016868
Cpe13g00359 655 SUPERFAMILY Phosphoglucomutase, C-terminal domain 510 655 IPR036900 GO:0016868|GO:0071704
Cpe13g00359 655 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 123 232 IPR005844 GO:0005975|GO:0016868
Cpe13g00359 655 PRINTS Phosphoglucomutase/phosphomannomutase family signature 290 309 IPR005841 GO:0005975|GO:0016868
Cpe13g00359 655 PRINTS Phosphoglucomutase/phosphomannomutase family signature 326 339 IPR005841 GO:0005975|GO:0016868
Cpe13g00359 655 PRINTS Phosphoglucomutase/phosphomannomutase family signature 185 199 IPR005841 GO:0005975|GO:0016868
Cpe13g00359 655 PRINTS Phosphoglucomutase/phosphomannomutase family signature 361 376 IPR005841 GO:0005975|GO:0016868
Cpe13g00359 655 PANTHER BNAA09G30060D PROTEIN 36 94 - -
Cpe13g00359 655 ProSitePatterns Phosphoglucomutase and phosphomannomutase phosphoserine signature. 186 195 IPR016066 GO:0000287
Cpe13g00359 655 PANTHER PHOSPHOHEXOMUTASE FAMILY MEMBER 120 183 IPR045244 GO:0004614|GO:0005975
Cpe13g00359 655 Gene3D - 273 381 - -
Cpe13g00359 655 PANTHER PHOSPHOHEXOMUTASE FAMILY MEMBER 183 655 IPR045244 GO:0004614|GO:0005975
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00359 K01835 pgm; phosphoglucomutase [EC:5.4.2.2] - csv:101218883 1033.09
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g01839 Cpe13g00359 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00696 Cpe-Chr5:4270532 Cpe13g00359 Cpe-Chr13:3686568 0 dispersed
Cpe13g00057 Cpe-Chr13:432227 Cpe13g00359 Cpe-Chr13:3686568 0 dispersed
Cpe01g01839 Cpe-Chr1:15636496 Cpe13g00359 Cpe-Chr13:3686568 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g464 . . . . . . Bma14g01897 . . . . . . . . . Cpe01g01839 . . . . . . . . . . . . . . . . Cone6ag0384 Cone9ag0411 . Csa05g02011 . . Blo06g01007 Blo11g00973 . . . . . . . Cmo04g02216 Cmo15g01007 Cma04g02117 Cma15g00965 Car04g02059 Car15g00912 Cpe13g00359 . Bhi12g00924 . . . . . . Cla01g00622 Cam01g0650 Cec01g0643 Cco01g0668 Clacu01g0638 Cmu01g0612 Cre09g1890 Lsi09g00672 . Chy09g00838 Cme09g01370
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005872 2 2 2 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00359 Cpe_Chr13 FPKM 11.81148 12.424639 14.198739 15.146074 8.108325 8.714108 8.711675 22.300587 24.203587 24.618687