Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00361 ATGGCCGCCAACAAATTTGCCACCATCTTGCACCGAAACTCCAACAAGTTCACCCTTATTTTAGTCTACGCTCTTCTCGAATGGGTTCTCATCTTTCTTCTTCTTCTTCAAGCCCTTTTCTCTTACCTGATCGTTAAATTTGCAGAGTGGTTTGGGCTGAAGCGCCCCTGTTTGTGGTGTTCCAGAGTGGACCATGTGTTCGAGCCTGGGAGAAAGCGTTCTTACAGAGATCTTCTTTGTGAAGCTCATTCCATGGAGATTTCTAATCTGGGTTACTGTTCGAATCATCGGAAACTCACTGAGTTTCGAGATTTGTGCGAGGATTGCTCGTCTTCTTCTAAGTCCGACGAGTTCTATCAGATTCCTAAGAGCTTTCCCTTTTTTGGTGATGAGAAGGAGGGTTTGAAGAGCTGTTCTTGCTGTGGGGAGAGCTTGAAGAATCGTTTGTTTTCTCCTTGTATTTTGATTAAGCCCAATTGGGGGGATTTGGATTATGCCCAGAAGGGGGATTTTATTTCTGAGGCGGAAATTGATGTTCACTCGGAAGATGTCGTCGGAGACAGGGAAATCTCCAACGTTTCCGGCGAGGAAGAGGCTGAGAAGAACTCCACTTGCTCTGTTTGTGGCTGTGGCTGTAAAGATTCAGCGGTTCATGAGGATGACGATAGAGTTGAAGATCTGAGCTCTTGTAATCAGAAATCAGTTCAAGTTGGTTCTGAGAAAGAGGATGAATTGGCTGAGATTTCTCCAAATCATCTTGAGTTCTACATTGACCGGGGCGACGATCGGCGGCTTATTCCAGTCGATTTGATCAACTTTTCGGCCTCTGAGGACGACCACAACAACGACAACGACAACGACAACATCCTTAGCCAAGTGAAAGATGAGGAACAAGGACAAGAGGATTGTGGGAATGAAGATGTCGTTTTGGATTTTGGCTCCCACTTTGTGAATCAAGATTGGGATGTTGCAGAGGTGGAAGCCATGGATGTGGAGGAGAGTAGCAGAAGCCCCTCTGGCTATGAAGATCCGTCAATGAGAGGAGAAAAAGAAGAACAAGCTGAGGCTTCCATTGATGCTCATAAAGAAGGCCTTGAAGAATTGGTAGTGGCAACAAGAGAGCCAGACTCAGATCTTCATCAAGATTTACACATGTGGAATGATGAACTTGATGTAGAGATTTTGATGGGGACGAATATTCCTGATCGTCCCGATCACGATCCCATCGGCGACATTCAAACTCAAACCGACCTTCCTCCACATTCTGATGCACAAGAAGATCCTTCCCCAAGTTCATCATTGGAATTTGACACTATGCAAGATTCTAACAAAGCTCGTAAATCTGAGCTCGACGAGGAAGTCGAGGAAGCTAACGAAGAGGTAGAGTTCAAGATCTTGTCCGTGGAAACGAGTTCTCAACCGTTGGACGATCACAAACCGTCGAGTTCTGAGCTCAATGAGAATGAAGAAGAAGATAAAGTTCCTGATACACCCACTTCAATGGATAGTTTCCATCAGCTACACAAGAAGCTGCTATTACTCGACAGAAAGGAATCTGGAACGGAAGAGTCGTTGGATGGAAGCATCATAAGCGAGACCGAAAGCGGGGATGGAGTATTGACGATCGAGAAGTTGAAGTCGGCGTTGAGAACGGAAAGAAAGGCATTGAATGCGTTATATGCAGAGCTAGAAGAAGAGAGAAGTGCTTCAGCCATAGCAGCCAACCAGACAATGGCAATGATCAATAGGCTTCAAGAGGAGAAAGCAAGCATGCAAATGGAAGCTTTGCAGTACCAAAGAATGATGGAGGAGCAATCCGAGTATGACCAGGAAGCTTTACAGCTTTTGAACGAGCTCGTCGTAAAGAGGGAAAAGGAAAAGCAAGAACTCGAGAAAGAACTCGAAGTTTACCGAAAAAAGCTTCAAGATTATGAAGCTAAAGAGAAAATAGCATTGTTAAGGAACAGAAAAGAAGGTAGCTTCCAAAGTAGACATTCTTCGGTTTCTTGTAGCAATGCCGATGATAGCGATGGGCTATCGATCGATTTGAACACCGAAGCAAAGAAAGACGAAGATTTATGTTCTAACCAAGAAACGGAGAATCAAAACACCCCGGCTGAGGCAGTCCTTTATTTGGACGAAACCATGGCGAACTTCGAGGAAGAAAGGCTGTCCATTCTTGAGGAGCTGAAGATGTTGGAAGAGAAGCTCTTCACTTTAAGTGATGAAGAACAACAATTAGAAGACGTTGTACATTATTGTGAACAGAATGGTAATGGCTACCACAAGAACTCGGATTATACCACTGAAACAAACGGATTCGAAAACGGTCACCATTTGAACGGAAAACATTATCCCGAGAGAAGAGCGATGAGCACGAAAGCCAAACGACTTCTTCCCCTTTTCAACGATGCAGTCGATGCCGATATTGAAGACGTAACAAACAGAGAAGAACAAGTTTTCGACTCCATTTCTGTCAACAAATTCGATACAGAATTCAGGAGGGTTGCTGTTGAGGAAGAGGTCGATCACGTGTACGAGAGATTACAAGCACTCGAAGCAGATAGGGAGTTTCTAAAGCATTGCATTGGCTCCCTAAAAAAAGGAGACAAAGGCATAGAGCTTCTCCAAGAGATCTTACAGCATCTCCGCGATCTAAGGAGCGTCGATCTCCATTTGAAGAACATGGGAGACACTGTCCTAGCATGA 2709 44.59 MAANKFATILHRNSNKFTLILVYALLEWVLIFLLLLQALFSYLIVKFAEWFGLKRPCLWCSRVDHVFEPGRKRSYRDLLCEAHSMEISNLGYCSNHRKLTEFRDLCEDCSSSSKSDEFYQIPKSFPFFGDEKEGLKSCSCCGESLKNRLFSPCILIKPNWGDLDYAQKGDFISEAEIDVHSEDVVGDREISNVSGEEEAEKNSTCSVCGCGCKDSAVHEDDDRVEDLSSCNQKSVQVGSEKEDELAEISPNHLEFYIDRGDDRRLIPVDLINFSASEDDHNNDNDNDNILSQVKDEEQGQEDCGNEDVVLDFGSHFVNQDWDVAEVEAMDVEESSRSPSGYEDPSMRGEKEEQAEASIDAHKEGLEELVVATREPDSDLHQDLHMWNDELDVEILMGTNIPDRPDHDPIGDIQTQTDLPPHSDAQEDPSPSSSLEFDTMQDSNKARKSELDEEVEEANEEVEFKILSVETSSQPLDDHKPSSSELNENEEEDKVPDTPTSMDSFHQLHKKLLLLDRKESGTEESLDGSIISETESGDGVLTIEKLKSALRTERKALNALYAELEEERSASAIAANQTMAMINRLQEEKASMQMEALQYQRMMEEQSEYDQEALQLLNELVVKREKEKQELEKELEVYRKKLQDYEAKEKIALLRNRKEGSFQSRHSSVSCSNADDSDGLSIDLNTEAKKDEDLCSNQETENQNTPAEAVLYLDETMANFEEERLSILEELKMLEEKLFTLSDEEQQLEDVVHYCEQNGNGYHKNSDYTTETNGFENGHHLNGKHYPERRAMSTKAKRLLPLFNDAVDADIEDVTNREEQVFDSISVNKFDTEFRRVAVEEEVDHVYERLQALEADREFLKHCIGSLKKGDKGIELLQEILQHLRDLRSVDLHLKNMGDTVLA 902
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3893792 3897960 - Cp4.1LG13g03620.1 Cpe13g00361 479559

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00361 902 Coils Coil 574 647 - -
Cpe13g00361 902 MobiDBLite consensus disorder prediction 415 439 - -
Cpe13g00361 902 MobiDBLite consensus disorder prediction 328 358 - -
Cpe13g00361 902 Pfam Zein-binding 544 634 IPR007656 -
Cpe13g00361 902 MobiDBLite consensus disorder prediction 343 358 - -
Cpe13g00361 902 MobiDBLite consensus disorder prediction 398 501 - -
Cpe13g00361 902 MobiDBLite consensus disorder prediction 480 498 - -
Cpe13g00361 902 Coils Coil 835 855 - -
Cpe13g00361 902 MobiDBLite consensus disorder prediction 465 479 - -
Cpe13g00361 902 PANTHER MYOSIN-BINDING PROTEIN 2 1 898 IPR039306 GO:0017022
Cpe13g00361 902 Coils Coil 440 467 - -
Cpe13g00361 902 ProSiteProfiles GTD-binding domain profile. 540 638 IPR007656 -
Cpe13g00361 902 Coils Coil 542 569 - -
Cpe13g00361 902 PANTHER MYOSIN-BINDING PROTEIN 3 1 898 - -
Cpe13g00361 902 Coils Coil 716 750 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00361 - - - cmos:111444983 1660.58
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g01841 Cpe13g00361 CCT
Cpe01g01841 Cpe13g00361 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00361 Cpe-Chr13:3893792 Cpe15g00055 Cpe-Chr15:385642 8.94E-35 dispersed
Cpe14g00233 Cpe-Chr14:1339151 Cpe13g00361 Cpe-Chr13:3893792 1.56E-14 dispersed
Cpe01g01841 Cpe-Chr1:15665425 Cpe13g00361 Cpe-Chr13:3893792 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g461 . . . . . . . . . . . . . . . . Cpe01g01841 . . . . . . . . . . . . . . . . Cone6ag0387 Cone9ag0414 . Csa05g02013 . . . Blo11g00974 . . . . . . . . Cmo15g01004 . Cma15g00963 . Car15g00909 Cpe13g00361 . Bhi12g00920 . . . . . . Cla01g00620 Cam01g0648 Cec01g0640 Cco01g0666 Clacu01g0636 Cmu01g0609 Cre09g1892 Lsi09g00670 . Chy09g00840 Cme09g01372
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006446 1 3 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00361 Cpe_Chr13 FPKM 6.911677 7.780715 9.305971 9.609319 12.048746 11.248372 14.363515 14.550929 12.242587 13.22718