Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00362 ATGTTGGCCGCAATTTCAATACCCTCCAATTTCCACTTCCCCGTTTCCTTCCGACAACACGCACTTTCGAGTACTCGCATGAAGATTTTTGCAGTTGGAGCTATGGGAACTCCTAAACCCAGAGACCCATCGCTCCTTCTCTTTCGTCTTCGTTTCAGAACAGAATTTTCCTGTAAACGCGTTGTACACAGGAGGGTTAGCAGCGATGGTGGTGGTGCTCTTGATTCTACACAGCAGCAGTCTGCACCTTCTGACATCAGAGACGTACCAAATGATTCTTCTAGTGTTGGACACAGTTATGTGGCATTGTTTGTCCGGATGCTCGGCTTAGATCATGATTCTCTAGATAGAGAACAAGCAGTCGTAGCTTTATGGAAATATTCCCTTGGAGGGAAGAAGCACATAGATTCCATCATGCAGTTTCCTGGATGCATAAATCTAACAGTAAATCTTCTTAGGTCAGAGTCGGCCTCTACGTGTGAAGCAGCTGCTGGCCTTCTACGGTCAATTTCTATGGTGAACTTATTCCGAGATTCAGTTGCCGAAAGTGGAGCAATTGAAGAGATAACTGCCTTGCTTAGTCGACCGTCCTTGACTCCTGAGGTGTGTTTTTCTTTTACGTTTGTCTTTTGGCTGCCTGTAATTGAGCCATATCTGAATGCAGCTGTAGCTGTGCAGGTGAAGGAGCAAAGCATATGTGTTCTGTGGAATTTGTCGGTAGACGAAAAACTCAGAAAAAAAATTGCAAATACTGATATTCTGCCATTACTTATTAAGAATCTTGATGATGAGGACATGAAGGTGAAGGAAGCAGCTGGAGGGGTTATAGCAAATCTTACTTTGAGCCCATGTAACCATGGGGTTATTGTTGAATCAGGCTTAATTCCTAAACTGGCGTATCAGTTAAAAGCTGAGGCAGACAGCTCAAAAACTATGAGAAAGGAAGCAAGAAATGCGTTGCTAGAACTTTGTAAAGATGAATATTATAGAATTCTTGTGATAGAGGAAGGACTGGTTCCAGTACCAGTACTTGGTGCTGCTGCCTATAAATCCTTCAAACCAGGCCTGCATTCATGGCCAAGTTTGCCTGATGGCACAGAAATTGAACGATCTTCCAAAAAACCTTCAAGATTTGGTGCCTCTGAATTACTCCTCGGGTTGAATGTTGATAATAATACAAACATAGATGAAGGCAAGATTAATGCAATTGTTGGACGGTCACAGCAACAATTTCTGGCTAGAATAGGTGCCATAGAACTTGAAGATTTAAAGGACACTCAATCTGAATCATCTACCAGTAATCATCTTACACTCTTACCTTGGAGAGACGGTGTGGCTCGACTAGTCTTGGTCCTCGAACTAGAGGATGATAATGCCAAAGTGAGAACTGCAGAGTTAATTGCTGATGCATCTATCAATGAACACATGCGTGTTTCATTCAAGGAAGCTGGAGCAATCAAACATTTAGTGAAGCTTTTGGATAATATGAATAATTCAGTCAAATGGGCTTCAATTCAAGCACTGGAGAGACTGTCAATCAGCAATGTTGTTTGCCAGACAATTGAAAATGCAGGTGCACTTAGTCCTTTGCTCAGTATTTTAAAGCTCTCAAGTATTCCTGAAAATGTGATGGAGAAGACCCTCGATATACTTTCTCGGATCTTGGACCCTAGTAAAGAAATGAAATCAAAGTTTTACAATGGACCGGTGAACGGTTCTCGAGGGGCACAACATTCAGAAAGGAATTCTGAAGCTTCTACCAGGAAAGATGTGTTGGATGCTGTTGTTGTTTCTAGCCTAGTTGAGATTTTGAAGACCTCATCCCCAAACTTGAAACGCAAAGCTGCTTCTATCCTAGAATTTATTTCTATTATGGACCCAAGCATGGATATAATCGATCCCATGGAGATAGAATCTGGATTGTCCGCTGTTTTCCAGCTTGAAGTTTCAATAGATGCTGATGCTGAAGATTGGCCGCCTGAAAGACATGCCCTTGAAGTTGAAGAAGCTGGTCTTGCAATATCAGCTGCCTCCCGACTACTAACAAAGCTTATGGATTCTGAAAAGTTCTGCAACAAAATAAACGCCGCCCGTTTCACCGAGTCGCTTCGTCGAATCCTGAAGTTGGACATTCCCGTTCAGCACAAAGATTGGATTGCTGCTTGCCTAATCAAAGTCAGCTCCGTTGCAGCTCCGAGCATAGATTCTGGAGATCCCATCGACATGGAGGTCGCTCTGTACGAAACTATACCGAGACTTGTTCAGCAGATGAAAAGCTCGTTGTCCATGGAAGTTCAGGAATCCGCTGTTGTGGAGCTGAACAGAATAGTCTCGGAGGGAATGGTTGATGCGACCCGAGCTGTTGCTTCTAAAGGCGGCATCTTTCCATTGGTGAAGCTGATCGATGAAGGAAGTGAGAGGGCAAGGGAAGCAGCCTTAGCCATATTGTATAATCTGAGTATGGATACTGAAAATCATCCAGCAATTTTAGCTGCTGGAGCTGTGCCAGCGTTGAGGAGAATTGTTCTGTCGCAACGAGTACAGTGGCAACAAGCTCTTTATTTGTTGAGGACATTGCCTACATGA 2586 43.39 MLAAISIPSNFHFPVSFRQHALSSTRMKIFAVGAMGTPKPRDPSLLLFRLRFRTEFSCKRVVHRRVSSDGGGALDSTQQQSAPSDIRDVPNDSSSVGHSYVALFVRMLGLDHDSLDREQAVVALWKYSLGGKKHIDSIMQFPGCINLTVNLLRSESASTCEAAAGLLRSISMVNLFRDSVAESGAIEEITALLSRPSLTPEVCFSFTFVFWLPVIEPYLNAAVAVQVKEQSICVLWNLSVDEKLRKKIANTDILPLLIKNLDDEDMKVKEAAGGVIANLTLSPCNHGVIVESGLIPKLAYQLKAEADSSKTMRKEARNALLELCKDEYYRILVIEEGLVPVPVLGAAAYKSFKPGLHSWPSLPDGTEIERSSKKPSRFGASELLLGLNVDNNTNIDEGKINAIVGRSQQQFLARIGAIELEDLKDTQSESSTSNHLTLLPWRDGVARLVLVLELEDDNAKVRTAELIADASINEHMRVSFKEAGAIKHLVKLLDNMNNSVKWASIQALERLSISNVVCQTIENAGALSPLLSILKLSSIPENVMEKTLDILSRILDPSKEMKSKFYNGPVNGSRGAQHSERNSEASTRKDVLDAVVVSSLVEILKTSSPNLKRKAASILEFISIMDPSMDIIDPMEIESGLSAVFQLEVSIDADAEDWPPERHALEVEEAGLAISAASRLLTKLMDSEKFCNKINAARFTESLRRILKLDIPVQHKDWIAACLIKVSSVAAPSIDSGDPIDMEVALYETIPRLVQQMKSSLSMEVQESAVVELNRIVSEGMVDATRAVASKGGIFPLVKLIDEGSERAREAALAILYNLSMDTENHPAILAAGAVPALRRIVLSQRVQWQQALYLLRTLPT 861
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3926926 3933456 - Cp4.1LG13g03630.1 Cpe13g00362 479560

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00362 861 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 222 861 - -
Cpe13g00362 861 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 46 203 - -
Cpe13g00362 861 Gene3D - 75 346 IPR011989 -
Cpe13g00362 861 SUPERFAMILY ARM repeat 447 848 IPR016024 -
Cpe13g00362 861 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 484 526 IPR000225 GO:0005515
Cpe13g00362 861 MobiDBLite consensus disorder prediction 67 93 - -
Cpe13g00362 861 MobiDBLite consensus disorder prediction 566 587 - -
Cpe13g00362 861 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 792 834 IPR000225 GO:0005515
Cpe13g00362 861 SUPERFAMILY ARM repeat 101 556 IPR016024 -
Cpe13g00362 861 Gene3D - 660 860 IPR011989 -
Cpe13g00362 861 MobiDBLite consensus disorder prediction 71 93 - -
Cpe13g00362 861 Gene3D - 419 648 IPR011989 -
Cpe13g00362 861 SMART arm_5 282 325 IPR000225 GO:0005515
Cpe13g00362 861 SMART arm_5 583 624 IPR000225 GO:0005515
Cpe13g00362 861 SMART arm_5 736 778 IPR000225 GO:0005515
Cpe13g00362 861 SMART arm_5 473 513 IPR000225 GO:0005515
Cpe13g00362 861 SMART arm_5 241 281 IPR000225 GO:0005515
Cpe13g00362 861 SMART arm_5 132 172 IPR000225 GO:0005515
Cpe13g00362 861 SMART arm_5 514 556 IPR000225 GO:0005515
Cpe13g00362 861 SMART arm_5 781 821 IPR000225 GO:0005515
Cpe13g00362 861 SMART arm_5 822 861 IPR000225 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00362 - - - bhj:120067080 1342.41
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00362 Cpe-Chr13:3926926 Cpe02g00558 Cpe-Chr2:3333000 1.40E-07 dispersed
Cpe13g00362 Cpe-Chr13:3926926 Cpe06g00615 Cpe-Chr6:3798714 6.24E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g458 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g02014 . . . . . . . . . . . . Cmo15g00939 . Cma15g00902 . Car15g00841 Cpe13g00362 . Bhi12g00918 . . . Hepe02g2639 . . Cla01g00619 Cam01g0647 Cec01g0639 Cco01g0665 Clacu01g0635 Cmu01g0608 Cre09g1893 Lsi09g00669 . Chy09g00841 Cme09g01373
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011868 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00362 Cpe_Chr13 FPKM 3.086953 1.932607 16.056416 17.679443 1.576097 2.198428 0.264073 3.848936 4.215609 4.338222