Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00364 ATGAAGAGGGAGCATCACTATCTTCATCCTCGTCCGGAGCCGTCTTCCGTGGCTACCGGCTCTAATCGGGAGAGTTATTTGAACACTGGTAAGGCTAAGCTTTGGGAGGAGGAGGTACAGCTCGACGGAGGAATGGATGAGCTTCTTGCTGTTTTAGGTTACAAGGTTAAGTCGTCGGACATGGCGGAAGTTGCTCAGAAGCTGGAACAGCTTGAAGAAGCTATGTGTCAAGTTCAGGATACTGGCCTTTCGCATCTCGCTTTCGACACTGTTCATTATAATCCCTCTGATCTGTCGACTTGGGTTGAAAGTATGCTCACTGAGCTCCATCCGCCGCCACCTACCTCGCATCTGGACGATTCATCGTTTTTAGCTCCGGCGGAATCCTCCACCATCGCTAACATTGATTATGAATCTCAACTGCAAACCAGCAGCAGGATTTTCGAGGAGTCTTCTAGTTCGGAATATGACCTTAAAGCTATTACGGATAGCGCGATTTATTCACCGAGAGAGAGTAAGCGTTTGAAAGCCTCCGAGTCGGACACGGATGTGTTCTCCACCTCCGCGATTGGGGCTTCTAATTCTGCAACTCGCCCAGTTGTTCTCGTCGATTCGCAGGAGAACGGAATTCAACTGGTTCATGCTCTGATGGTCTGTGCTGAAGCCGTACAGCAGAATAATCTGAATCTAGCGGAGGCTCTGGTAAAGCGAATCGATTACTTAGCGGTTTCTCAAGCCGGAGCGATGAGGAAAGTCGCCACGTTCTTCGCTGAAGCATTGGCACGCCGAATCTATAGGCTCTGCCCTGAGAATCCCCTCGATCGTTCAGTGCTCGATATGCTTCAGATGCATTTCTACGAGAGCTGTCCCTATCTGAAATTCGCTCATTTCACCGCGAATCAAGCGATTCTCGAAGCCTTCGAAGGGAAGAAGCGTGTTCACGTCATCGATTTCTCGATGAACCAGGGTATGCAGTGGCCGGCTTTGATTCAAGCCCTAGCTCTACGACCGAGTGGTCCACCTACCTTCCGACTCACCGGAATCGGCCCTCCGGCGCCGGATAACTCCGATTACCTCCAAGATGTGGGCTGGAAGCTCGCCAAATTCGCTGAAACCCTCCATGTGGAGTTCGAATACAGAGGATTTGTAGCGAACAGTTTGGCAGATCTGGACGCATCGATGCTGGAGCTCCGACCGAGCGAGGTGGAGGCGGTGGTAGTGAACTCGGTGTTCGAGCTGCATCAGCTACTGGCTCGGCCGGGGGCAATTGAGAAGGTTCTGTCGGTGGTGAAGCAGATGAAGCCGGAGATCGTGACGGTGGTGGAGCAGGAAGCGAACCACAACGGTCCGGTTTTCGTGGAACGATTCACTGAGTCACTCCATTACTACTCGACGCTGTTTGACTCGTTGGAGTGCTCCCCCAACAACCAAGACAAGATGATGTCGGAAATGTACCTTGGGAAACAAATCTGCAATGTGGTAGCTTGTGAAGGTGCCGACCGAGTGGAACGCCACGAAACCCTAACTCAGTGGCGCACTCGGTTAACCTCCGCCGGGTTCGATCCCATCCACCTCGGCTCAAACGCATTCAAGCAAGCGAGTATCCTCCTCGCCCTGTTTGGCAGCGGCGAAGGGTACCGGGTAGAAGAGAACGAGGGATCACTAATGCTGGGATGGCACACCCGCCCCCTCATCGCCACCTCCGCCTGGAAACCCGGCAACAACCCGGTGGTCGCTCACTGA 1743 53.07 MKREHHYLHPRPEPSSVATGSNRESYLNTGKAKLWEEEVQLDGGMDELLAVLGYKVKSSDMAEVAQKLEQLEEAMCQVQDTGLSHLAFDTVHYNPSDLSTWVESMLTELHPPPPTSHLDDSSFLAPAESSTIANIDYESQLQTSSRIFEESSSSEYDLKAITDSAIYSPRESKRLKASESDTDVFSTSAIGASNSATRPVVLVDSQENGIQLVHALMVCAEAVQQNNLNLAEALVKRIDYLAVSQAGAMRKVATFFAEALARRIYRLCPENPLDRSVLDMLQMHFYESCPYLKFAHFTANQAILEAFEGKKRVHVIDFSMNQGMQWPALIQALALRPSGPPTFRLTGIGPPAPDNSDYLQDVGWKLAKFAETLHVEFEYRGFVANSLADLDASMLELRPSEVEAVVVNSVFELHQLLARPGAIEKVLSVVKQMKPEIVTVVEQEANHNGPVFVERFTESLHYYSTLFDSLECSPNNQDKMMSEMYLGKQICNVVACEGADRVERHETLTQWRTRLTSAGFDPIHLGSNAFKQASILLALFGSGEGYRVEENEGSLMLGWHTRPLIATSAWKPGNNPVVAH 580
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3951163 3952905 + Cp4.1LG13g03610.1 Cpe13g00364 479562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00364 580 MobiDBLite consensus disorder prediction 1 24 - -
Cpe13g00364 580 Gene3D - 44 109 IPR038088 -
Cpe13g00364 580 Pfam GRAS domain family 212 571 IPR005202 -
Cpe13g00364 580 PANTHER DELLA PROTEIN GAI1-RELATED 24 572 IPR030006 GO:0003712|GO:0005634
Cpe13g00364 580 Pfam Transcriptional regulator DELLA protein N terminal 46 113 IPR021914 -
Cpe13g00364 580 Coils Coil 54 74 - -
Cpe13g00364 580 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 24 572 IPR005202 -
Cpe13g00364 580 ProSiteProfiles GRAS family profile. 203 571 IPR005202 -
Cpe13g00364 580 SMART DELLA_2 46 119 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g01843 Cpe13g00364 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01990 Cpe-Chr1:17007575 Cpe13g00364 Cpe-Chr13:3951163 0 dispersed
Cpe01g02589 Cpe-Chr1:21009953 Cpe13g00364 Cpe-Chr13:3951163 1.33E-99 dispersed
Cpe02g01442 Cpe-Chr2:12454581 Cpe13g00364 Cpe-Chr13:3951163 0 dispersed
Cpe03g00709 Cpe-Chr3:4282487 Cpe13g00364 Cpe-Chr13:3951163 0 dispersed
Cpe04g01154 Cpe-Chr4:9891174 Cpe13g00364 Cpe-Chr13:3951163 2.50E-154 dispersed
Cpe13g00364 Cpe-Chr13:3951163 Cpe13g00557 Cpe-Chr13:5583519 0 dispersed
Cpe04g01595 Cpe-Chr4:12417493 Cpe13g00364 Cpe-Chr13:3951163 1.84E-68 transposed
Cpe14g00825 Cpe-Chr14:6679421 Cpe13g00364 Cpe-Chr13:3951163 4.82E-66 transposed
Cpe01g01843 Cpe-Chr1:15723496 Cpe13g00364 Cpe-Chr13:3951163 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50398 PF03514 GRAS 1.50E-135 CL0063 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00364 K14494 - csv:101204164 1044.65