Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00365 ATGTTGCTGTACAAGCAGAAGAAGAATCAGAATGTTAAGGGCAACAGGCTCTTGATCAGCATCAATGTGCTCGGCAGCGCTGGTCCGATTCGATTTATTGTGAACGAGGAGCAACTTGTTGCTGCTGTTATTGATACAGCATTGAAATCCTACGCGCGTGAGGGCCGGCTGCCGATTCTTGGGTCCGATCTCAGAGATTTCCAGCTTTACTGCCCAATTGCTGGACCAGATGCCTTGAGTCCATGGGACACAATTGGATCGCATGGATCTCGGAACTTCATGTTGTGCAAGAAACCACAGCCAGAGAAAGTGGGAGAACATGGAAATTCGCCACCGGAGCCAAGTATCCCCCGCAAAGGCACAGGAAGCTGGAAGTCATGGATCAACAAGTCTCTGAATATGAAAATCTATTCCCATTGA 420 48.57 MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIVNEEQLVAAVIDTALKSYAREGRLPILGSDLRDFQLYCPIAGPDALSPWDTIGSHGSRNFMLCKKPQPEKVGEHGNSPPEPSIPRKGTGSWKSWINKSLNMKIYSH 139
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3962129 3963864 + Cp4.1LG13g03650.1 Cpe13g00365 479563

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00365 139 PANTHER BNAC05G50380D PROTEIN 1 135 IPR040358 -
Cpe13g00365 139 MobiDBLite consensus disorder prediction 98 122 - -
Cpe13g00365 139 PANTHER - 1 135 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00365 - - - csv:101204652 261.536
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00755 Cpe-Chr3:4654387 Cpe13g00365 Cpe-Chr13:3962129 1.13E-30 dispersed
Cpe05g00430 Cpe-Chr5:2451814 Cpe13g00365 Cpe-Chr13:3962129 7.37E-09 dispersed
Cpe13g00365 Cpe-Chr13:3962129 Cpe16g00483 Cpe-Chr16:5916393 7.20E-09 dispersed
Cpe02g01441 Cpe-Chr2:12453196 Cpe13g00365 Cpe-Chr13:3962129 4.09E-35 transposed
Cpe01g01845 Cpe-Chr1:15740882 Cpe13g00365 Cpe-Chr13:3962129 1.30E-88 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g453 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo11g00976 . . . . . . . . Cmo15g00998 . . . Car15g00904 Cpe13g00365 . . . . . . . . . . . . . . . . . Chy09g00847 Cme09g01380
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000783 5 3 3 7 4 3 3 3 3 1 3 3 3 2 3 4 3 3 4 3 3 3 2 1 2 3 3 4 3 2 92
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00365 Cpe_Chr13 FPKM 90.669258 98.896301 75.689629 70.596474 51.526016 46.323307 51.35751 15.426788 15.18267 12.850079