Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe13g00377 | ATGAAATTGGAAACTGCACTCTCAAATCTGCCATACGACCACTTTTGTGTAGCAGACGAAGTACAAGAACAGGTTGATTTGGTCAGAGCTCAGCTGATGAGAGCATCAAAGAACTATGAGTCTATGTCTGACCCCACACATAAGAAGCTTGAAGCTACAGGTTCTGTAAAAGCCATGATCTTTCATGATGTCAAGACCATGTCTAGTGTTGATGATGGAGATCCAGGCTCTCAGCATCGTCCTCCGAACCGCGACGATCTGATCCGTTTCGATTCGGATGAGCTGAAGAACTCAAATGCATGTTTCAATGAGTGTTCAAGTGTTCATTCTGAAATGGAAGATGTTCTATCCATCAAGAGCCAAGATGAAGTTGGGAAGCTTGATGTAATTGAAATTCCTGAGAACTTCTTATGTCCCATTTCCCTTGAATTAATGATCGATCCCATCATCGTCTCGACCGGACAGACATATGAAAGATCCAACATACAAAAATGGATAGACAGAGGAAATACAACATGTCCAAAGACTCAAGAGCAGCTTCAATCTCTGATCCTCACTCCAAATTTTGCTATGAGAAATTTGATCTCAGAATGGTGTGGAGAACACAATGTTAATTTAGAGAAAGGATTAACCAATAGGAAACTTAAGAAGTACAGATCATTTGAGGACGGTTGCCGAAGGACGTTACCGATCAAAACGTTGGTTCGACACCTTTCTTTCGGGTCGATACAGGAGCAGAAGGCGGCAGTGACCGAGATCCGACAGCTATCGAAAAGCAGCTCAGATCATAGAGTTGAAATAGCAAAAGCCGGAGCAATCCCCCAGCTGGTTGTCCTTTTAACTTCAGAAGATGTTGCAACACAAGAGAATGCAATTTCATGCATTTTGAACCTTTCACTTCATGAGCCAAACAAGAGACTTATAATGCTTCATGGTGCATTTTCTTACATTTCCCAAGTCCTCAAATTTGGGAGCATGGAAGGGAGAGAGTGTGCTGCTGGGACGATTTACAGCTTGTCGTTAGCTGACGAGAACAAGGCGATGATCGGGGCGTCGGGCGTGATCCCTGACCTTATAGAAATCCTCCAGATTGGAAGCCCAAGAGGGCAGAAAGATGCTGCAGGAGCTCTGTTGAATTTGTGTATGTACCAAGGGAACAAAGGCAGAGCTTTCAGGGCTGGGATTGTCAAACTATTATTGAAAATGCTCTCTGATTCAAATGGCACATTGGTTGATGACGCTCTTTATATAATGTCAGTTCTTTGCAGCCATCCAGAGGCCAAGGCTGCAATGGGGCATGCTAATTCATTGCTTGTTTTGACCAATGTTCTCAAGAAGGGGTCGTCTCGCAGCAGGGAAAATGCAGTGGCAGTTCTGCTTGCATTGTGTAAGGGAGATTGGGAGAAGCTGGAATGGTTAACCAGGCTTGGCGCCGCGGTGCCGTTGATGAAACTTTCCGAGGATGGCACGGAGAGAGCGAGGCGGAAGGCTGCTTCATTGTTGGATCAACTCAGAAAATCATGA | 1524 | 44.75 | MKLETALSNLPYDHFCVADEVQEQVDLVRAQLMRASKNYESMSDPTHKKLEATGSVKAMIFHDVKTMSSVDDGDPGSQHRPPNRDDLIRFDSDELKNSNACFNECSSVHSEMEDVLSIKSQDEVGKLDVIEIPENFLCPISLELMIDPIIVSTGQTYERSNIQKWIDRGNTTCPKTQEQLQSLILTPNFAMRNLISEWCGEHNVNLEKGLTNRKLKKYRSFEDGCRRTLPIKTLVRHLSFGSIQEQKAAVTEIRQLSKSSSDHRVEIAKAGAIPQLVVLLTSEDVATQENAISCILNLSLHEPNKRLIMLHGAFSYISQVLKFGSMEGRECAAGTIYSLSLADENKAMIGASGVIPDLIEILQIGSPRGQKDAAGALLNLCMYQGNKGRAFRAGIVKLLLKMLSDSNGTLVDDALYIMSVLCSHPEAKAAMGHANSLLVLTNVLKKGSSRSRENAVAVLLALCKGDWEKLEWLTRLGAAVPLMKLSEDGTERARRKAASLLDQLRKS | 507 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 4077679 | 4079442 | + | Cp4.1LG13g03750.1 | Cpe13g00377 | 479575 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe13g00377 | 507 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 131 | 207 | IPR013083 | - | |
Cpe13g00377 | 507 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 271 | 313 | IPR000225 | GO:0005515 | |
Cpe13g00377 | 507 | SMART | arm_5 | 383 | 423 | IPR000225 | GO:0005515 | |
Cpe13g00377 | 507 | SMART | arm_5 | 301 | 341 | IPR000225 | GO:0005515 | |
Cpe13g00377 | 507 | SMART | arm_5 | 424 | 464 | IPR000225 | GO:0005515 | |
Cpe13g00377 | 507 | SMART | arm_5 | 342 | 382 | IPR000225 | GO:0005515 | |
Cpe13g00377 | 507 | SMART | arm_5 | 260 | 300 | IPR000225 | GO:0005515 | |
Cpe13g00377 | 507 | SUPERFAMILY | ARM repeat | 231 | 504 | IPR016024 | - | |
Cpe13g00377 | 507 | CDD | RING-Ubox_PUB | 136 | 178 | IPR045210 | - | |
Cpe13g00377 | 507 | Gene3D | - | 346 | 507 | IPR011989 | - | |
Cpe13g00377 | 507 | Pfam | Armadillo/beta-catenin-like repeat | 260 | 299 | IPR000225 | GO:0005515 | |
Cpe13g00377 | 507 | Pfam | Armadillo/beta-catenin-like repeat | 343 | 381 | IPR000225 | GO:0005515 | |
Cpe13g00377 | 507 | PANTHER | U-BOX DOMAIN-CONTAINING PROTEIN 11 | 2 | 506 | - | - | |
Cpe13g00377 | 507 | Pfam | U-box domain | 132 | 203 | IPR003613 | GO:0004842|GO:0016567 | |
Cpe13g00377 | 507 | ProSiteProfiles | U-box domain profile. | 131 | 205 | IPR003613 | GO:0004842|GO:0016567 | |
Cpe13g00377 | 507 | PANTHER | U BOX DOMAIN-CONTAINING | 2 | 506 | - | - | |
Cpe13g00377 | 507 | SUPERFAMILY | RING/U-box | 126 | 204 | - | - | |
Cpe13g00377 | 507 | Gene3D | - | 228 | 345 | IPR011989 | - | |
Cpe13g00377 | 507 | Coils | Coil | 18 | 38 | - | - | |
Cpe13g00377 | 507 | SMART | Ubox_2 | 135 | 198 | IPR003613 | GO:0004842|GO:0016567 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe01g00039 | Cpe-Chr1:266562 | Cpe13g00377 | Cpe-Chr13:4077679 | 1.25E-177 | dispersed | |
Cpe13g00377 | Cpe-Chr13:4077679 | Cpe16g00603 | Cpe-Chr16:6674165 | 1.70E-120 | dispersed | |
Cpe20g00814 | Cpe-Chr20:7385804 | Cpe13g00377 | Cpe-Chr13:4077679 | 4.55E-96 | dispersed | |
Cpe13g00377 | Cpe-Chr13:4077679 | Cpe01g00910 | Cpe-Chr1:5374541 | 2.10E-175 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe13g00377 | - | - | cpep:111809444 | 994.571 |