Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00377 ATGAAATTGGAAACTGCACTCTCAAATCTGCCATACGACCACTTTTGTGTAGCAGACGAAGTACAAGAACAGGTTGATTTGGTCAGAGCTCAGCTGATGAGAGCATCAAAGAACTATGAGTCTATGTCTGACCCCACACATAAGAAGCTTGAAGCTACAGGTTCTGTAAAAGCCATGATCTTTCATGATGTCAAGACCATGTCTAGTGTTGATGATGGAGATCCAGGCTCTCAGCATCGTCCTCCGAACCGCGACGATCTGATCCGTTTCGATTCGGATGAGCTGAAGAACTCAAATGCATGTTTCAATGAGTGTTCAAGTGTTCATTCTGAAATGGAAGATGTTCTATCCATCAAGAGCCAAGATGAAGTTGGGAAGCTTGATGTAATTGAAATTCCTGAGAACTTCTTATGTCCCATTTCCCTTGAATTAATGATCGATCCCATCATCGTCTCGACCGGACAGACATATGAAAGATCCAACATACAAAAATGGATAGACAGAGGAAATACAACATGTCCAAAGACTCAAGAGCAGCTTCAATCTCTGATCCTCACTCCAAATTTTGCTATGAGAAATTTGATCTCAGAATGGTGTGGAGAACACAATGTTAATTTAGAGAAAGGATTAACCAATAGGAAACTTAAGAAGTACAGATCATTTGAGGACGGTTGCCGAAGGACGTTACCGATCAAAACGTTGGTTCGACACCTTTCTTTCGGGTCGATACAGGAGCAGAAGGCGGCAGTGACCGAGATCCGACAGCTATCGAAAAGCAGCTCAGATCATAGAGTTGAAATAGCAAAAGCCGGAGCAATCCCCCAGCTGGTTGTCCTTTTAACTTCAGAAGATGTTGCAACACAAGAGAATGCAATTTCATGCATTTTGAACCTTTCACTTCATGAGCCAAACAAGAGACTTATAATGCTTCATGGTGCATTTTCTTACATTTCCCAAGTCCTCAAATTTGGGAGCATGGAAGGGAGAGAGTGTGCTGCTGGGACGATTTACAGCTTGTCGTTAGCTGACGAGAACAAGGCGATGATCGGGGCGTCGGGCGTGATCCCTGACCTTATAGAAATCCTCCAGATTGGAAGCCCAAGAGGGCAGAAAGATGCTGCAGGAGCTCTGTTGAATTTGTGTATGTACCAAGGGAACAAAGGCAGAGCTTTCAGGGCTGGGATTGTCAAACTATTATTGAAAATGCTCTCTGATTCAAATGGCACATTGGTTGATGACGCTCTTTATATAATGTCAGTTCTTTGCAGCCATCCAGAGGCCAAGGCTGCAATGGGGCATGCTAATTCATTGCTTGTTTTGACCAATGTTCTCAAGAAGGGGTCGTCTCGCAGCAGGGAAAATGCAGTGGCAGTTCTGCTTGCATTGTGTAAGGGAGATTGGGAGAAGCTGGAATGGTTAACCAGGCTTGGCGCCGCGGTGCCGTTGATGAAACTTTCCGAGGATGGCACGGAGAGAGCGAGGCGGAAGGCTGCTTCATTGTTGGATCAACTCAGAAAATCATGA 1524 44.75 MKLETALSNLPYDHFCVADEVQEQVDLVRAQLMRASKNYESMSDPTHKKLEATGSVKAMIFHDVKTMSSVDDGDPGSQHRPPNRDDLIRFDSDELKNSNACFNECSSVHSEMEDVLSIKSQDEVGKLDVIEIPENFLCPISLELMIDPIIVSTGQTYERSNIQKWIDRGNTTCPKTQEQLQSLILTPNFAMRNLISEWCGEHNVNLEKGLTNRKLKKYRSFEDGCRRTLPIKTLVRHLSFGSIQEQKAAVTEIRQLSKSSSDHRVEIAKAGAIPQLVVLLTSEDVATQENAISCILNLSLHEPNKRLIMLHGAFSYISQVLKFGSMEGRECAAGTIYSLSLADENKAMIGASGVIPDLIEILQIGSPRGQKDAAGALLNLCMYQGNKGRAFRAGIVKLLLKMLSDSNGTLVDDALYIMSVLCSHPEAKAAMGHANSLLVLTNVLKKGSSRSRENAVAVLLALCKGDWEKLEWLTRLGAAVPLMKLSEDGTERARRKAASLLDQLRKS 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4077679 4079442 + Cp4.1LG13g03750.1 Cpe13g00377 479575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00377 507 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 207 IPR013083 -
Cpe13g00377 507 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 271 313 IPR000225 GO:0005515
Cpe13g00377 507 SMART arm_5 383 423 IPR000225 GO:0005515
Cpe13g00377 507 SMART arm_5 301 341 IPR000225 GO:0005515
Cpe13g00377 507 SMART arm_5 424 464 IPR000225 GO:0005515
Cpe13g00377 507 SMART arm_5 342 382 IPR000225 GO:0005515
Cpe13g00377 507 SMART arm_5 260 300 IPR000225 GO:0005515
Cpe13g00377 507 SUPERFAMILY ARM repeat 231 504 IPR016024 -
Cpe13g00377 507 CDD RING-Ubox_PUB 136 178 IPR045210 -
Cpe13g00377 507 Gene3D - 346 507 IPR011989 -
Cpe13g00377 507 Pfam Armadillo/beta-catenin-like repeat 260 299 IPR000225 GO:0005515
Cpe13g00377 507 Pfam Armadillo/beta-catenin-like repeat 343 381 IPR000225 GO:0005515
Cpe13g00377 507 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 11 2 506 - -
Cpe13g00377 507 Pfam U-box domain 132 203 IPR003613 GO:0004842|GO:0016567
Cpe13g00377 507 ProSiteProfiles U-box domain profile. 131 205 IPR003613 GO:0004842|GO:0016567
Cpe13g00377 507 PANTHER U BOX DOMAIN-CONTAINING 2 506 - -
Cpe13g00377 507 SUPERFAMILY RING/U-box 126 204 - -
Cpe13g00377 507 Gene3D - 228 345 IPR011989 -
Cpe13g00377 507 Coils Coil 18 38 - -
Cpe13g00377 507 SMART Ubox_2 135 198 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00039 Cpe-Chr1:266562 Cpe13g00377 Cpe-Chr13:4077679 1.25E-177 dispersed
Cpe13g00377 Cpe-Chr13:4077679 Cpe16g00603 Cpe-Chr16:6674165 1.70E-120 dispersed
Cpe20g00814 Cpe-Chr20:7385804 Cpe13g00377 Cpe-Chr13:4077679 4.55E-96 dispersed
Cpe13g00377 Cpe-Chr13:4077679 Cpe01g00910 Cpe-Chr1:5374541 2.10E-175 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00377 - - cpep:111809444 994.571