Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00388 ATGCACAAGAGCACTACTTCTGCGTCTAATACTATTGCTGCTGGGACCACTATGTCATCGTCGTCGCAACTGAAATCGCAGCTTCAAACAAACAACGTTTATGCTTCCCTCTATAATTCCTCAATCTTTGCTCCAAAGCAATCCGTGCCTGTCTCTCTTCCATCGACTCTCTATGGTGACTCTACTCACACGGATTCAATCTCCGCTTCAAAATCGATAAACAACCACCTCTATCAAACCTGCGTTGTTCAAGATCACCAAGAAATGGTTAATCGTCATAGCCTCTGTCTCACTCATCTTCGGGAAGCAACCGAAGAAGCCGATGCTCTTCGACAAGAGAATATTCACCTTAGAAGTATTAACCACGAGCTTAGCAAACACCTGAGTCTCCTGATCCACGCTTCGGTTCAGAAACAGTACGGCTCCTCCGATCAAACTCCTCCGTTTAATTTTGTGGAGGGATTCCGCGGACTCAGTGTCGCGGAGAAAGGGGCAAGCAGTTCGACATGGGAAGATATTTCCGATGAGAGTCCGACGAGCGTAATGGAGGGTGGAAGGGTAGAGGGCGTTGAGGTGGAGAGGTTTTCGCTCCCGAAGAGCATCTCCGTGAGATCCAATGGATACTTGAAGATGGCTCAAGGCGGCAGCAGCCAGGGCGGAAAGGTCCGCGTCTCATCTCGGCCCAGAACTGCAAGTCCTGTCAAGGTTACGCAGAAGGTGTACGTTCAAGGAGTGAAAGAAGAGGAAAAGCCACTAGAGCTGGAGGTGTACAACCAGGGCATGTTCAAAACCGAGCTCTGTAACAAATGGCAGGAAACAGGTAGCTGCCCTTATGGAGACCACTGCCAATTCGCCCATGGAATAGAGGAGCTCCGCCCCGTCATCCGCCACCCCCGGTACAAGACGGAGGTCTGCCGTATGGTCCTTGCCGGAGTTGTCTGCCCTTACGGTCACCGCTGCCACTTCCGCCATGCTCTCACTGACCAGGAAAGGCTCATGGGGCCGCTCAAGCCCACCTGCAGGACCGCCCCCAAGCTCGACAGGTGA 1047 52.24 MHKSTTSASNTIAAGTTMSSSSQLKSQLQTNNVYASLYNSSIFAPKQSVPVSLPSTLYGDSTHTDSISASKSINNHLYQTCVVQDHQEMVNRHSLCLTHLREATEEADALRQENIHLRSINHELSKHLSLLIHASVQKQYGSSDQTPPFNFVEGFRGLSVAEKGASSSTWEDISDESPTSVMEGGRVEGVEVERFSLPKSISVRSNGYLKMAQGGSSQGGKVRVSSRPRTASPVKVTQKVYVQGVKEEEKPLELEVYNQGMFKTELCNKWQETGSCPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTDQERLMGPLKPTCRTAPKLDR 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4242845 4246021 - Cp4.1LG13g06850.1 Cpe13g00388 479586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00388 348 PANTHER CCCH ZINC FINGER/TIS11-RELATED 52 337 IPR045877 GO:0003729
Cpe13g00388 348 SUPERFAMILY CCCH zinc finger 258 293 IPR036855 GO:0046872
Cpe13g00388 348 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 15 52 337 - -
Cpe13g00388 348 SMART c3hfinal6 261 288 IPR000571 GO:0046872
Cpe13g00388 348 SMART c3hfinal6 299 326 IPR000571 GO:0046872
Cpe13g00388 348 Coils Coil 100 120 - -
Cpe13g00388 348 ProSiteProfiles Zinc finger C3H1-type profile. 299 327 IPR000571 GO:0046872
Cpe13g00388 348 ProSiteProfiles Zinc finger C3H1-type profile. 261 289 IPR000571 GO:0046872
Cpe13g00388 348 SUPERFAMILY CCCH zinc finger 295 329 IPR036855 GO:0046872
Cpe13g00388 348 MobiDBLite consensus disorder prediction 1 23 - -
Cpe13g00388 348 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 262 287 IPR000571 GO:0046872
Cpe13g00388 348 Gene3D - 255 294 - -
Cpe13g00388 348 Gene3D - 295 331 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01748 Cpe-Chr1:12710904 Cpe13g00388 Cpe-Chr13:4242845 8.34E-09 dispersed
Cpe01g02591 Cpe-Chr1:21023359 Cpe13g00388 Cpe-Chr13:4242845 3.33E-55 dispersed
Cpe13g00388 Cpe-Chr13:4242845 Cpe05g00170 Cpe-Chr5:903363 6.19E-07 dispersed
Cpe13g00388 Cpe-Chr13:4242845 Cpe07g01086 Cpe-Chr7:9612682 2.65E-07 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50400 PF00642 zf-CCCH 5.40E-12 CL0537 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00388 K18753 - csv:101203274 635.18