Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00396 ATGAGTGGCGGTGGCAGTAGCACTTCTCGAAGCACTAGGGATTTGATCTGCCATGCCGGTGCTGGTGCTGCTGCAGGTGCTATAGCAGCCACGTTCGTCTGCCCTTTAGATGTGATCAAGACGAGGCTGCAAGTGCATGGTCTTCCATCTGGTCAAAGAGGAGGTAGTATTATTGTCACTAGCCTACAAGACATAATGCGTTCTGAAGGTTTCAGGGGACTGTACCGTGGCCTTTCACCAACAATATTAGCACTTCTTCCAAACTGGGCTGTCTACTTCACAGTTTATGAGCATCTAAAAGGCGTACTTCATTCAGATGGGGACGATGGTCATCAACTCTCGTTCGGCGCAAATATGGTTGCTGCTGCTGGGGCTGGGGGATCTACTGCCATTGCAACAAATCCTTTATGGGTTGTTAAGACCAGACTCCAAACACAGGGAATGAGGCCTGGTGTGGTTCCTTACACAGGCATGGTTTCAGCATTTACCAGGATCATACAGGAAGAAGGAATCCGTGGGCTTTACAGTGGTATCCTCCCTTCATTGGTTGGGATAAGTCATGTTGCCATTCAATTTCCAGCATACGAAAAGCTCAAATCATACATGGCAAAAAGAGCTAACTCCGGGACATTTAGCAATTGCCTCGTAGTTCGTTCCAGGATGCAAGAGCAAGGCCAAGCCAGAAATGTTGCTCCTCAATACTCAGGCGTACTGGACTGTATCAAAAAGGTTTTTCAAAAGGAAGGTCTTCCCGGTTTTTACAGGGGTTGTGCGACAAATCTGTTACGAACAACGCCATCCGCCGTAATAACCTTCACCAGCTATGAGATGATACATAGGTTTCTACTGCAATTTATACCTCAAGGCGAGGAGAAACCTTCCCCCCATCTGAATTCGAATAGCAATAGCCATGTGAAGCCCCAAAAGGCAAACCGAGACGACTCGAAGGAAGAGAGTGATTCCGGCTTACAACAATCACAATCCCAGCCAAGTAAGCAAACTAGAATTCCTCTGGGGAACAAAGAACAGTTAGCATCTAGACACTGA 1047 47.18 MSGGGSSTSRSTRDLICHAGAGAAAGAIAATFVCPLDVIKTRLQVHGLPSGQRGGSIIVTSLQDIMRSEGFRGLYRGLSPTILALLPNWAVYFTVYEHLKGVLHSDGDDGHQLSFGANMVAAAGAGGSTAIATNPLWVVKTRLQTQGMRPGVVPYTGMVSAFTRIIQEEGIRGLYSGILPSLVGISHVAIQFPAYEKLKSYMAKRANSGTFSNCLVVRSRMQEQGQARNVAPQYSGVLDCIKKVFQKEGLPGFYRGCATNLLRTTPSAVITFTSYEMIHRFLLQFIPQGEEKPSPHLNSNSNSHVKPQKANRDDSKEESDSGLQQSQSQPSKQTRIPLGNKEQLASRH 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4303424 4307938 - Cp4.1LG13g06880.1 Cpe13g00396 479594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00396 348 PRINTS Mitochondrial carrier protein signature 128 146 IPR002067 GO:0055085
Cpe13g00396 348 PRINTS Mitochondrial carrier protein signature 18 31 IPR002067 GO:0055085
Cpe13g00396 348 PRINTS Mitochondrial carrier protein signature 175 193 IPR002067 GO:0055085
Cpe13g00396 348 PRINTS Mitochondrial carrier protein signature 31 45 IPR002067 GO:0055085
Cpe13g00396 348 PRINTS Mitochondrial carrier protein signature 77 97 IPR002067 GO:0055085
Cpe13g00396 348 SUPERFAMILY Mitochondrial carrier 13 277 IPR023395 -
Cpe13g00396 348 PANTHER NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1, CHLOROPLASTIC 216 291 - -
Cpe13g00396 348 PANTHER NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1, CHLOROPLASTIC 8 208 - -
Cpe13g00396 348 Gene3D Mitochondrial carrier domain 110 287 IPR023395 -
Cpe13g00396 348 Gene3D Mitochondrial carrier domain 4 109 IPR023395 -
Cpe13g00396 348 MobiDBLite consensus disorder prediction 292 348 - -
Cpe13g00396 348 ProSiteProfiles Solute carrier (Solcar) repeat profile. 113 201 IPR018108 -
Cpe13g00396 348 MobiDBLite consensus disorder prediction 321 340 - -
Cpe13g00396 348 Pfam Mitochondrial carrier protein 216 283 IPR018108 -
Cpe13g00396 348 Pfam Mitochondrial carrier protein 112 204 IPR018108 -
Cpe13g00396 348 Pfam Mitochondrial carrier protein 18 104 IPR018108 -
Cpe13g00396 348 ProSiteProfiles Solute carrier (Solcar) repeat profile. 13 102 IPR018108 -
Cpe13g00396 348 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 216 291 IPR044712 GO:0006862|GO:0055085
Cpe13g00396 348 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 8 208 IPR044712 GO:0006862|GO:0055085
Cpe13g00396 348 ProSiteProfiles Solute carrier (Solcar) repeat profile. 202 281 IPR018108 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00396 Cpe-Chr13:4303424 Cpe17g00770 Cpe-Chr17:6061544 9.53E-94 dispersed
Cpe13g00396 Cpe-Chr13:4303424 Cpe12g00913 Cpe-Chr12:7892461 9.12E-120 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00396 K15115 - csv:101216902 552.747