Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00397 ATGGCGGAAAATTATAATAAGAGCCAGTATTGTCTCCATCGGCTTCATCTCCCCGTGATTATCCCGCTGCCCTCTCCGCCGCAGCCTCACCTCCGATCAAGCGCCGTCCGGTCAATTTCCGATTTGGGTTTCAAAGATCTGGCAAAAATGAAGAGCCAAATTCAAAGCCCGAAGCTGATCCATATCCATCTTAGCTTCTTCAACGTCGTCCCTTACATCCTCCTCTTCACCGCCGGAATCACCGCCGGAGTTTTCCTCACTTTCTATCTCTCAAATTTCTCCATCAGCTTAAACCTCACCCAGATCCCTCCTTCGATTTCTTCCCCGGTGACCGGACCCCGGGTGGGGTTGGAGGAGTATTTGAAACCGCCGGAAGTAATGCACGACATGGAGGATGAGGAGCTTTTGTGGAGAGCTTCAATGGCGGCCGGAATTCGGGAATTCCCGTTCCGGCGGGTTCCGAAGGTGGCATTCATGTTCTTGTCGAGAGGGCCAATGTATTTGGCGCCTCTTTGGGAAGAGTTCTTCAAGGGAAATGAAGGGCTTTACTCGGTTTACATTCACTCTGATCCTTCTTATAATCATTCTTTCCCGGAAAGCCCTGTTTTCCATGGTCGAAGAATTCCGAGCAAGCGATTCGTTCTTCTCTCAGAAGCCTGTATTCCTCTCTTCAACCTCTCTACCGTATACTCTTTCCTCATGAACTCCACCATGAAAAGCTTCGTTATGAGCTACGATGAGCCAAGTAACGTCGGTCGTGGCCGATATAGGGCTAAGATGTTCCCACCCATCTCCCTAAAACAATGGCGGAAAGGCTCGCAGTGGTTCGAGATGGACAGAGACACCGCCGTTGCCGTCGTCTCTGACCGGAAATACTTCCCTGTCTTCCAAAAGTATTGCAAAGGCCAATGCTACTCCGATGAACACTACTTGCCCACCTTGGTCAATGTTTTGGGCTGGGACAGGAATGCTAATCGGAGTTTGACTTGGGTTGACTGGTCAAAGGGTGGCCCACATCCAACGAGATTCTCGCGGTCAGATATCCACGTGGAGCTTTTACAGAGGCTAAGGAATCAAACTGAGTGTACGAAAAGTAAAACGGAGGGGACAGGTGTTTGCTTCCTATTCGCTAGAAAGTTTTCTCCGAACACATTGGGAAGGCTGATGAAAATTGCACCAAAGGCCTTGCACTTTGGGAGATAG 1203 49.71 MAENYNKSQYCLHRLHLPVIIPLPSPPQPHLRSSAVRSISDLGFKDLAKMKSQIQSPKLIHIHLSFFNVVPYILLFTAGITAGVFLTFYLSNFSISLNLTQIPPSISSPVTGPRVGLEEYLKPPEVMHDMEDEELLWRASMAAGIREFPFRRVPKVAFMFLSRGPMYLAPLWEEFFKGNEGLYSVYIHSDPSYNHSFPESPVFHGRRIPSKRFVLLSEACIPLFNLSTVYSFLMNSTMKSFVMSYDEPSNVGRGRYRAKMFPPISLKQWRKGSQWFEMDRDTAVAVVSDRKYFPVFQKYCKGQCYSDEHYLPTLVNVLGWDRNANRSLTWVDWSKGGPHPTRFSRSDIHVELLQRLRNQTECTKSKTEGTGVCFLFARKFSPNTLGRLMKIAPKALHFGR 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4316033 4317635 - Cp4.1LG13g07010.1 Cpe13g00397 479595

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00397 400 PANTHER CORE-2/I-BRANCHING ENZYME 211 397 - -
Cpe13g00397 400 PANTHER CORE-2/I-BRANCHING ENZYME 55 211 - -
Cpe13g00397 400 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED 211 397 IPR044174 GO:0016757
Cpe13g00397 400 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED 55 211 IPR044174 GO:0016757
Cpe13g00397 400 Pfam Core-2/I-Branching enzyme 211 356 IPR003406 GO:0016020|GO:0016757
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00397 - - - csv:101202787 623.624
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00397 Cpe-Chr13:4316033 Cpe20g00129 Cpe-Chr20:710524 5.08E-112 dispersed
Cpe13g00397 Cpe-Chr13:4316033 Cpe02g01709 Cpe-Chr2:14021100 8.07E-97 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g340 Blo01g00733 . Bda01g01847 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone9ag0449 . Csa05g02066 . . . . . . . Bpe02g02024 . . . . Cmo15g00962 . Cma15g00923 . Car15g00865 Cpe13g00397 . Bhi12g00834 . . . . . Lcy10g1475 Cla01g00570 Cam01g0596 Cec01g0585 Cco01g0611 Clacu01g0589 Cmu01g0561 Cre09g1946 Lsi09g00618 . Chy09g00894 Cme09g01427
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002751 1 2 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 3 1 2 2 2 2 2 2 2 2 2 2 3 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00397 Cpe_Chr13 FPKM 17.62867 19.827694 4.441918 5.640599 3.377784 2.149581 3.247495 4.595994 4.743235 5.45739
Cpe13g00397 Cpe_Chr00 FPKM 3.791827 3.829906 1.581991 1.55224 5.11628 4.621366 6.024737 1.294473 1.032921 0.923609
Cpe13g00397 Cpe_Chr00 FPKM 3.540837 3.268904 1.393322 1.487848 4.877626 4.322367 5.340426 1.180283 0.970105 0.839286