Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00400 ATGAGAATGCGGTCCGAGAGATCGAAATCTCTTCATAATTTCATGTTGCCGTGTTTGAAGTGGGGGAATCAGAAGCACTTGAGGTGCATGAAGGTGAATTCTAATGGTGTACAGGTCTCCGGCGTGAATCGACAATCTCACTCCTCGAGATCGGAGGAGTCTACGGAGAGTAGGAGTCTGGAATCGGGCTCAGAGATGCGGATGTTCTTCAAGGATTTGGAGATGAGACCGAAGGTTTCGAAATCGATAATCAAGAAAACCGATGACGTCGGGATCGAGGCGGTGAGAGAGAAGCTTATGTTTGATCTGAAGACGGCGGCCGATAAAATGAAAGAGGCGATTTTAAGTAAGGAGGCAGTGGTGGCCGAAGAAGAGGCGGAAGAGAAGAACGATTCTGCCGGAATGGAAGAGACGCCGGCGGCGGTTGCGTTATCGATGGCGGAGACCAGACCTTGGAATCTAAGGACGAGGAGAGCCGCTTGTAAGGCTCCGAATGTTGACGGTGGTGGAAGTAAGAATTTGAAGCTTGATGAGAAGAAATCGAATTCCAATTCCCCGTTGCGTAGTGACGGTGGCGCCAAGTCACCTAGGTTGAAAATTGGAACGGAGAAGAAGAAGAAGAAGGTGAAATTGGTAGTGCCGCTCTCGAAGAGAGAGATCGATGAAGATTTCATGGAAATGGTGGGACTCAGACCACCGAGGCGGCCCAAGAAGAGGACCAGAATCGTACAAAAGCAATTAGATACGCTTTTTCCTGGGTTATGGCTGTCGGAGATCACAGCTGATTTGTATAAGGTCCCTGAATTACCTGAAAACGGCAAGGTGATGAAGGTTTAA 837 48.75 MRMRSERSKSLHNFMLPCLKWGNQKHLRCMKVNSNGVQVSGVNRQSHSSRSEESTESRSLESGSEMRMFFKDLEMRPKVSKSIIKKTDDVGIEAVREKLMFDLKTAADKMKEAILSKEAVVAEEEAEEKNDSAGMEETPAAVALSMAETRPWNLRTRRAACKAPNVDGGGSKNLKLDEKKSNSNSPLRSDGGAKSPRLKIGTEKKKKKVKLVVPLSKREIDEDFMEMVGLRPPRRPKKRTRIVQKQLDTLFPGLWLSEITADLYKVPELPENGKVMKV 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4358769 4360659 - Cp4.1LG13g06740.1 Cpe13g00400 479598

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00400 278 PANTHER PUTATIVE (DUF1639)-RELATED 2 268 - -
Cpe13g00400 278 PANTHER OS01G0688600 PROTEIN 2 268 - -
Cpe13g00400 278 MobiDBLite consensus disorder prediction 49 63 - -
Cpe13g00400 278 MobiDBLite consensus disorder prediction 160 201 - -
Cpe13g00400 278 Coils Coil 107 127 - -
Cpe13g00400 278 Pfam Protein of unknown function (DUF1639) 215 264 IPR012438 -
Cpe13g00400 278 MobiDBLite consensus disorder prediction 38 63 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00400 - - - csv:101205564 430.254
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe13g00249 Cpe-Chr13:1944457 Cpe13g00400 Cpe-Chr13:4358769 2.69E-19 dispersed
Cpe13g00400 Cpe-Chr13:4358769 Cpe18g00698 Cpe-Chr18:6941871 3.11E-41 dispersed
Cpe01g01813 Cpe-Chr1:15258590 Cpe13g00400 Cpe-Chr13:4358769 4.50E-154 wgd
Cpe01g01337 Cpe-Chr1:8047864 Cpe13g00400 Cpe-Chr13:4358769 9.08E-60 wgd
Cpe13g00400 Cpe-Chr13:4358769 Cpe04g01395 Cpe-Chr4:11284602 2.84E-20 wgd
Cpe13g00400 Cpe-Chr13:4358769 Cpe09g00313 Cpe-Chr9:1844255 2.01E-52 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g330 . . Bda01g02068 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0819 Cone19ag0825 . Cone9ag0452 . . . . . . . . . Bpe02g02259 . . . . Cmo15g00959 . Cma15g00920 . Car15g00862 Cpe13g00400 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004927 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 3 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00400 Cpe_Chr13 FPKM 37.185131 36.121368 82.111115 80.721916 26.574556 34.162792 27.856356 16.07641 18.63726 12.936381
Cpe13g00400 Cpe_Chr00 FPKM 1.675966 2.351654 0.0 0.0 0.81284 0.645482 0.0 0.0 0.0 0.0
Cpe13g00400 Cpe_Chr00 FPKM 0.795775 1.024071 0.0 0.122874 1.765945 1.442649 1.33378 0.0 0.0 0.0