Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00403 ATGACGGTGAAAAACGAGAATCTCGACAAGGACAAGTTGCTGGAGCAGTTTCTGAGAATCGGATTGGATGAGCGTACTGCACGAAACACCGTTGCCAACAATAAGGTCACTGCCAATCTCAATGCCGTTATTCATGAGGCTGGCGTGCTTGAAGGATGCGATAAGGCTGTTGGAAATCTATTGTATACTGTTGCGACAAAGTATCCTACAAATGCACTTGTTCATCGACCAATATTGCTGAAATATGTTACCTCAAATAAGATAAAGATGCCGGCTCAATTGGAAGCGGCATTTTCATTTTTTTCTGCTGCAGGCCAAGAAGATATTAAATTAAATGAATTTGAAGATAAATGTGGTGTTGGTGTAGAAGTTTCAGTTGAAGAAATTGAGAAGACTGTGAATGAGGTCTTTGAAGAACATAAAAATGAAATTCTGGAGCAACGTTATCGAACGAATGTGGGTGACTTGTTTGGGCAGGTACGGAAGAAGCATCCTTGGGCTGATCCAAAGATTGTAAAGCAATATATTGATTCCAAATTATTTGAATTACTCGGTGAAAGGACTGCAGCAGATAATGAAAAGATAGTGAAAAAGAAAAAAGAGAAGCCTGCTAAAGTAGACGATAAACCTGTTGCTATTGTTTCTGTGGAACAGCCTCCATCTGAGGAAGATCTTAACCCATATTTAATATTCCCCCGGCCAGAGGATAATTATAAGGTTCATACTGAAGTATTTTTCAGTAATGGAACTATCCTAAGATGTTGCAACACCAAGGAGCTGCTTGAAAAGCACCTAAAAGCAACAGGGGGAAGAGTTTTGACTCGCTTTCCTCCTGAACCAAATGGTTATCTTCATATTGGTCATGCCAAGGCAATGTTTGTTGATTTTGGCCTGGCAAAAGAGCGAGGTGGAGGTTGTTATTTGAGGTATGACGACACGAATCCAGAAGCTGAGAAGAAGGAATATATTGATCATATAGAAGAGATTGTCAAGTGGATGGGTTGGGAGCCTTTCAAGATTACTTATACTAGTGATTACTTCCAAGATCTGTATGAGTTAGCTGTGGAGCTCATACGTAGGGGTCATGCTTATGTGGATCACCAGACTCCTGACGAAATAAAGGAGTACAGAGAGAAAAAGATGAATAGTCCCTGGAGGGATAGGCCTGTGGCTGAGTCATTGAAATTGTTTGACGAAATGAAGCAAGGTCTGATTGAGGAAGGCAAGGCGACTCTTAGAATGAAACAAGACATGCAGAGTGATAATTTTAATATGTATGATCTTATTGCATATCGTATTAAGTTTACTCCTCATCCACATGCTGGAGACAAGTGGTGTATTTATCCAAGCTACGATTATGCACACTGCACTGTGGATTCTCTTGAGAATATAACACATTCGGGATTCCACCATCCAGACATCTATTCGCTGAGACTTGCACCAATTCAAACCATACAAGTTATGGGAGTTATAGCTTCCTCTGTTGGTTATGTTAAGTGTGGAAGAGACTCTGACCCTTTTGAATTAGTCATAGTTCTGTGTACCTTGGAATTTGAAACACGTCGTGCTTCGTACTACTGGTTATTGCATGCACTGGACCTTTATCAACCGTATGTGTGGGAATATTCTCGCCTCAATGTTTCAAATAATGTGTTGTCTAAGCGTAAGTTAAATCGACTGGTGACGGAAAAGTGGGTTGATGGTTGGGATGATCCTCGCCTATTGACACTTGCTGGTCTTAGGCGCAGAGGTGTTACATCAACTGCAATTAATGCGTTTGTTCGAGGAATGGGAATTACAAGAAGTGACTGTTCTTTGATTCAGTTCAATCGTCTTGAATATCACATTAGAGAAGAGCTAAATAAAACTGCTGCACGAGCAATGGTTGTCTTGCAGCCACTTAAGGTTGTTATTACAAACTTAGAAAATGGATCAATTTTGGATCTTGATGCCAAGAAATGGCCTGAAGCTCAAGCAGATGAGGCATCGGCCTTTTATAAGGTTCCCTTTTCCAATATTGTGTACATAGAACAATCAGATTTCCGGTTGAAAGATTCAAAAGATTACTATGGTCTTGCACCTGGAAAGTCTGTCCTTCTGAGGTATGCATATCCTATTAAATGTACAGATGTTATCCTTGCGGATGATAAGGAAACTGTACTTGAGATTCGAGCAGAATATGATGCTTCCAAGAAATCAAAGCCAAAGGGGGTCCTACATTGGGTTGCACAACCTTCTCCAGGAGTTAATCCGCTCAATGTGGAAGTTAGATTGTTTGACAAGCTATTCCTTTCTGAGAACCCTGCTGAACTTGATAATTGGCTTGCTGATTTGAACCCACATTCTAAAGTAGTCATCCCAAGTGCATATGCTGTACCAGAACTTAGGAATGCTGTTGTTGGGGATACATTCCAATTTGAAAGGCTTGGGTATTTTGCGGTTGATAAAGACTCAACTCCTGAGAAACTCGTATTCAATCGCACAGTCACGCTGAGAGATAGCTATAAGAGCAGCAAGTGA 2520 40.67 MTVKNENLDKDKLLEQFLRIGLDERTARNTVANNKVTANLNAVIHEAGVLEGCDKAVGNLLYTVATKYPTNALVHRPILLKYVTSNKIKMPAQLEAAFSFFSAAGQEDIKLNEFEDKCGVGVEVSVEEIEKTVNEVFEEHKNEILEQRYRTNVGDLFGQVRKKHPWADPKIVKQYIDSKLFELLGERTAADNEKIVKKKKEKPAKVDDKPVAIVSVEQPPSEEDLNPYLIFPRPEDNYKVHTEVFFSNGTILRCCNTKELLEKHLKATGGRVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGGCYLRYDDTNPEAEKKEYIDHIEEIVKWMGWEPFKITYTSDYFQDLYELAVELIRRGHAYVDHQTPDEIKEYREKKMNSPWRDRPVAESLKLFDEMKQGLIEEGKATLRMKQDMQSDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCTVDSLENITHSGFHHPDIYSLRLAPIQTIQVMGVIASSVGYVKCGRDSDPFELVIVLCTLEFETRRASYYWLLHALDLYQPYVWEYSRLNVSNNVLSKRKLNRLVTEKWVDGWDDPRLLTLAGLRRRGVTSTAINAFVRGMGITRSDCSLIQFNRLEYHIREELNKTAARAMVVLQPLKVVITNLENGSILDLDAKKWPEAQADEASAFYKVPFSNIVYIEQSDFRLKDSKDYYGLAPGKSVLLRYAYPIKCTDVILADDKETVLEIRAEYDASKKSKPKGVLHWVAQPSPGVNPLNVEVRLFDKLFLSENPAELDNWLADLNPHSKVVIPSAYAVPELRNAVVGDTFQFERLGYFAVDKDSTPEKLVFNRTVTLRDSYKSSK 839
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4400254 4413356 + Cp4.1LG13g06840.1 Cpe13g00403 479601

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00403 839 PANTHER GLUTAMINE-TRNA LIGASE 13 467 - -
Cpe13g00403 839 PANTHER GLUTAMINE-TRNA LIGASE 489 836 - -
Cpe13g00403 839 SUPERFAMILY Nucleotidylyl transferase 263 617 - -
Cpe13g00403 839 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 278 289 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cpe13g00403 839 Gene3D - 123 192 IPR042559 -
Cpe13g00403 839 Pfam Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 12 169 IPR007639 GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418
Cpe13g00403 839 Pfam Glutaminyl-tRNA synthetase, non-specific RNA binding region part 2 172 249 IPR007638 GO:0000166|GO:0004819|GO:0005524|GO:0005737|GO:0006425
Cpe13g00403 839 Gene3D - 8 122 IPR042558 -
Cpe13g00403 839 Pfam tRNA synthetases class I (E and Q), catalytic domain 512 621 IPR020058 GO:0004812|GO:0005524|GO:0043039
Cpe13g00403 839 Pfam tRNA synthetases class I (E and Q), catalytic domain 272 467 IPR020058 GO:0004812|GO:0005524|GO:0043039
Cpe13g00403 839 Pfam tRNA synthetases class I (E and Q), anti-codon binding domain 624 815 IPR020059 GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418
Cpe13g00403 839 PANTHER OS05G0182800 PROTEIN 13 467 - -
Cpe13g00403 839 PANTHER OS05G0182800 PROTEIN 489 836 - -
Cpe13g00403 839 SUPERFAMILY Ribosomal protein L25-like 624 834 IPR011035 GO:0006412
Cpe13g00403 839 Gene3D Ribosomal Protein L25; Chain P 628 747 IPR020056 -
Cpe13g00403 839 PRINTS Glutamyl-tRNA synthetase signature 275 287 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Cpe13g00403 839 PRINTS Glutamyl-tRNA synthetase signature 449 459 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Cpe13g00403 839 PRINTS Glutamyl-tRNA synthetase signature 304 317 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Cpe13g00403 839 Gene3D Ribosomal Protein L25; Chain P 748 833 IPR020056 -
Cpe13g00403 839 Gene3D HUPs 244 471 IPR014729 -
Cpe13g00403 839 Gene3D HUPs 503 627 IPR014729 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00403 K01886 QARS, glnS; glutaminyl-tRNA synthetase [EC:6.1.1.18] - csv:101210547 1514.21
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00192 Cpe-Chr4:1959547 Cpe13g00403 Cpe-Chr13:4400254 3.76E-61 transposed
Cpe15g00657 Cpe-Chr15:7234007 Cpe13g00403 Cpe-Chr13:4400254 5.64E-06 transposed
Cpe01g01816 Cpe-Chr1:15327758 Cpe13g00403 Cpe-Chr13:4400254 2.69E-27 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g328 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0820 Cone19ag0826 . . . . . . . . . . . . . . . . Cmo15g00955 . Cma15g00916 . Car15g00859 Cpe13g00403 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002630 2 4 2 3 2 2 1 2 2 2 2 2 1 2 2 1 2 2 1 2 2 1 1 2 2 2 3 2 2 2 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00403 Cpe_Chr13 FPKM 3.118302 2.855905 5.45699 5.84113 5.274977 4.846848 4.79431 3.781186 3.178692 4.589103