Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00409 ATGGTTTACTCCTACAAAATGCAAGAAATTGCATCCACAATGGGCTTCACGCTCTCCGATTTCGCCGATACTTTGGAACAAGAACGCTCCAAAGTCCTCATGTTTCAGCGCGAGCTCCCTCTCTGTTTGCAGATCGTTTCCCATGCCATTGATTGCTGCAGGCAGCACCTATCGGAGTCGACGACGGAGAATCGTCAATCCGAGTGCTCCGACCAGACTTCCAGCGACATGGGTCTTGTTCTTGAGGAGTTCATTCCAATTAATGGGGTTTTTGATTCTGAACGACCACGACACCTCCATGAAGCTCAAACAGAGAACAACAAGATGAACGATTCTGATTTAAACAATTTGAATTTGCCTCCCTCCGATTGGCTCAGATCTGCTCAGCTTTGGAATCAGACCTCAGATCCTCCTCCTCTGAGTCAGGACACGCCGGAGAACACGACGGTTGTTGAGGTAAACAGAAATGGAGGTGCTTTCCAGCCATTTCAGAAGGAGAAAACCGGTAGTGGCGGAGGGATGATGTCGTCGTCTTCAGATCCGGTTCCGGCTGCGGAGACGGGGTTAGGTGGAAGCAGCCGACGGGAAGAGAAGGAAGCACAGAATCAGAGGAAACAGAGACGTTGCTGGTCTCCGGAGCTGCACCGGCGGTTCCTTCATGCGCTTCAGCAGCTCGGAGGCTCCCATGTGGCGACGCCGAAGCAAATAAGGGAATTGATGAAGGTGGATGGTCTTACCAACGGCGAAGTCAAAAGTCATCTACAGAAGTATCGTCTACACACCAAATGCCCCACTCCGACAATCCACAACAACGAGACCGTCCAACCGCCCCAGTTCCTGGTGGTCGGCGGCATATGGGTACCGGCGTCCGACTACGCCACCACTTCCTCCAGAGAAGCAATCAGCGCCGCTACCACCAACGGAATATATGCACCGATGGTTGCAGCGGCGGCGCCGCAGCCATTACCCAGTACAGTTCAAAAGCCCAAGCCCAGGCCCATGATTCCTTCCTCCTCCGCCGCCGCAGCCATTACCCAGTACAGTTCAAAAGCCCAAGCCCAGGCCCATGATTCCTTCCTCCTCCGCCGCCGCAGCCATTACCCAGTACAGTTCAAAAGCCCAAGCCCAGGCCCATGA 1137 53.83 MVYSYKMQEIASTMGFTLSDFADTLEQERSKVLMFQRELPLCLQIVSHAIDCCRQHLSESTTENRQSECSDQTSSDMGLVLEEFIPINGVFDSERPRHLHEAQTENNKMNDSDLNNLNLPPSDWLRSAQLWNQTSDPPPLSQDTPENTTVVEVNRNGGAFQPFQKEKTGSGGGMMSSSSDPVPAAETGLGGSSRREEKEAQNQRKQRRCWSPELHRRFLHALQQLGGSHVATPKQIRELMKVDGLTNGEVKSHLQKYRLHTKCPTPTIHNNETVQPPQFLVVGGIWVPASDYATTSSREAISAATTNGIYAPMVAAAAPQPLPSTVQKPKPRPMIPSSSAAAAITQYSSKAQAQAHDSFLLRRRSHYPVQFKSPSPGP 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4437223 4439784 + Cp4.1LG13g06810.1 Cpe13g00409 479607

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00409 378 Gene3D - 204 261 - -
Cpe13g00409 378 MobiDBLite consensus disorder prediction 156 209 - -
Cpe13g00409 378 Pfam Myb-like DNA-binding domain 207 258 IPR001005 -
Cpe13g00409 378 PANTHER TRANSCRIPTION FACTOR HHO2 18 336 - -
Cpe13g00409 378 SUPERFAMILY Homeodomain-like 203 262 IPR009057 -
Cpe13g00409 378 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 205 260 IPR006447 GO:0003677
Cpe13g00409 378 MobiDBLite consensus disorder prediction 191 209 - -
Cpe13g00409 378 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 18 336 IPR044787 GO:0003700|GO:0006355
Cpe13g00409 378 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 202 262 IPR017930 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00409 - - - csv:101210056 515.768
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe09g00276 Cpe13g00409 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00989 Cpe-Chr7:9007488 Cpe13g00409 Cpe-Chr13:4437223 8.07E-53 dispersed
Cpe09g00276 Cpe-Chr9:1632809 Cpe13g00409 Cpe-Chr13:4437223 2.84E-77 dispersed
Cpe13g00409 Cpe-Chr13:4437223 Cpe18g00460 Cpe-Chr18:5577250 6.74E-47 dispersed
Cpe01g01799 Cpe-Chr1:14682230 Cpe13g00409 Cpe-Chr13:4437223 4.84E-165 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g270 Blo01g00489 Blo16g01054 Bda01g02090 . Bpe13g01332 . Bma14g01699 . . Cmo18g01059 . Cma18g01041 . Car18g00967 Sed06g1866 Cpe09g00276 . Bhi07g01367 Tan04g0896 Cmetu10g0277 Lac13g0461 Hepe01g1219 . . Cla05g02327 Cam05g2500 Cec05g2524 Cco05g2566 Clacu05g2494 Cmu05g2357 Cre05g2473 Cone13ag0852 Cone19ag0853 Cone6ag0464 Cone9ag0476 Lsi04g00286 Csa05g02583 Chy10g01118 Cme10g00288 . Blo11g00832 Bda07g01528 . . Bpe02g02281 . Bma06g00768 . . . . . . Car15g00854 Cpe13g00409 . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe03g01593 CST 12 269 G2-like Transcription Factor Family AT3G24120 61.7 5.3e-77 285.0
Cpe08g00397 CST 12 335 G2-like Transcription Factor Family AT3G24120 53.2 4.5e-76 282.0
Cpe15g00910 CST 18 162 G2-like Transcription Factor Family AT3G24120 58.5 1.5e-39 160.6
Cpe15g00178 . 4 152 G2-like Transcription Factor Family AT3G24120 52.5 2.4e-37 153.3
Cpe19g00909 . 31 149 G2-like Transcription Factor Family AT3G24120 68.0 2.4e-37 153.3
Cpe15g00191 . 154 356 G2-like Transcription Factor Family AT5G16560 52.2 2.6e-42 170.2
Cpe05g00160 . 168 353 G2-like Transcription Factor Family AT5G16560 53.8 2.9e-41 166.8
Cpe07g00452 CCT,CST 13 152 G2-like Transcription Factor Family AT5G42630 58.3 3.1e-37 152.5
Cpe13g00409 CCT 20 255 G2-like Transcription Factor Family AT1G25550 50.6 3.6e-51 199.1
Cpe01g01799 . 24 261 G2-like Transcription Factor Family AT1G25550 52.2 2.5e-44 176.4
Cpe01g01799 . 24 261 G2-like Transcription Factor Family AT3G25790 51.8 1.0e-36 151.0
Cpe10g01100 . 1 303 G2-like Transcription Factor Family AT5G05090 54.4 2.2e-74 276.2
Cpe19g00248 . 1 299 G2-like Transcription Factor Family AT5G05090 53.9 2.3e-71 266.2
Cpe08g01347 . 1 288 G2-like Transcription Factor Family AT5G05090 52.3 9.6e-70 260.8
Cpe03g00415 . 1 265 G2-like Transcription Factor Family AT5G05090 57.9 4.5e-67 251.9
Cpe03g01593 CST 12 313 G2-like Transcription Factor Family AT4G13640 56.5 9.0e-61 231.1
Cpe03g01593 CST 12 269 G2-like Transcription Factor Family AT3G24120 61.7 5.3e-77 285.0
Cpe08g00397 CST 12 335 G2-like Transcription Factor Family AT3G24120 53.2 4.5e-76 282.0
Cpe15g00910 CST 18 162 G2-like Transcription Factor Family AT3G24120 58.5 1.5e-39 160.6
Cpe15g00178 . 4 152 G2-like Transcription Factor Family AT3G24120 52.5 2.4e-37 153.3
Cpe19g00909 . 31 149 G2-like Transcription Factor Family AT3G24120 68.0 2.4e-37 153.3
Cpe11g00707 . 7 200 G2-like Transcription Factor Family AT1G69580 50.5 4.7e-37 152.5
Cpe05g01028 CST 1 160 G2-like Transcription Factor Family AT1G79430 75.3 3.9e-58 222.6
Cpe08g00397 CST 26 196 G2-like Transcription Factor Family AT1G79430 56.5 1.5e-38 157.5
Cpe03g01593 CST 41 205 G2-like Transcription Factor Family AT1G79430 59.4 6.5e-37 152.1
Cpe10g00724 . 84 317 G2-like Transcription Factor Family AT2G01060 51.6 6.2e-52 201.4
Cpe10g01100 . 1 303 G2-like Transcription Factor Family AT3G10760 60.7 4.4e-88 322.0
Cpe19g00248 . 1 299 G2-like Transcription Factor Family AT3G10760 61.9 4.4e-88 322.0
Cpe08g01347 . 1 288 G2-like Transcription Factor Family AT3G10760 59.5 6.0e-85 311.6
Cpe03g00415 . 1 278 G2-like Transcription Factor Family AT3G10760 56.7 8.6e-76 281.2
Cpe08g01347 . 1 287 G2-like Transcription Factor Family AT2G40970 50.5 3.4e-61 232.3
Cpe19g00248 . 1 204 G2-like Transcription Factor Family AT2G40970 61.6 5.5e-59 224.9
Cpe03g00415 . 1 195 G2-like Transcription Factor Family AT2G40970 59.4 9.3e-59 224.2
Cpe10g01100 . 1 203 G2-like Transcription Factor Family AT2G40970 58.8 1.2e-58 223.8
Cpe05g00834 . 108 367 G2-like Transcription Factor Family AT4G28610 50.2 6.2e-52 202.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004323 2 1 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50402 PF00249 Myb_DNA-binding 2.70E-06 CL0123 Cpe TF