Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00409 ATGGTTTACTCCTACAAAATGCAAGAAATTGCATCCACAATGGGCTTCACGCTCTCCGATTTCGCCGATACTTTGGAACAAGAACGCTCCAAAGTCCTCATGTTTCAGCGCGAGCTCCCTCTCTGTTTGCAGATCGTTTCCCATGCCATTGATTGCTGCAGGCAGCACCTATCGGAGTCGACGACGGAGAATCGTCAATCCGAGTGCTCCGACCAGACTTCCAGCGACATGGGTCTTGTTCTTGAGGAGTTCATTCCAATTAATGGGGTTTTTGATTCTGAACGACCACGACACCTCCATGAAGCTCAAACAGAGAACAACAAGATGAACGATTCTGATTTAAACAATTTGAATTTGCCTCCCTCCGATTGGCTCAGATCTGCTCAGCTTTGGAATCAGACCTCAGATCCTCCTCCTCTGAGTCAGGACACGCCGGAGAACACGACGGTTGTTGAGGTAAACAGAAATGGAGGTGCTTTCCAGCCATTTCAGAAGGAGAAAACCGGTAGTGGCGGAGGGATGATGTCGTCGTCTTCAGATCCGGTTCCGGCTGCGGAGACGGGGTTAGGTGGAAGCAGCCGACGGGAAGAGAAGGAAGCACAGAATCAGAGGAAACAGAGACGTTGCTGGTCTCCGGAGCTGCACCGGCGGTTCCTTCATGCGCTTCAGCAGCTCGGAGGCTCCCATGTGGCGACGCCGAAGCAAATAAGGGAATTGATGAAGGTGGATGGTCTTACCAACGGCGAAGTCAAAAGTCATCTACAGAAGTATCGTCTACACACCAAATGCCCCACTCCGACAATCCACAACAACGAGACCGTCCAACCGCCCCAGTTCCTGGTGGTCGGCGGCATATGGGTACCGGCGTCCGACTACGCCACCACTTCCTCCAGAGAAGCAATCAGCGCCGCTACCACCAACGGAATATATGCACCGATGGTTGCAGCGGCGGCGCCGCAGCCATTACCCAGTACAGTTCAAAAGCCCAAGCCCAGGCCCATGATTCCTTCCTCCTCCGCCGCCGCAGCCATTACCCAGTACAGTTCAAAAGCCCAAGCCCAGGCCCATGATTCCTTCCTCCTCCGCCGCCGCAGCCATTACCCAGTACAGTTCAAAAGCCCAAGCCCAGGCCCATGA 1137 53.83 MVYSYKMQEIASTMGFTLSDFADTLEQERSKVLMFQRELPLCLQIVSHAIDCCRQHLSESTTENRQSECSDQTSSDMGLVLEEFIPINGVFDSERPRHLHEAQTENNKMNDSDLNNLNLPPSDWLRSAQLWNQTSDPPPLSQDTPENTTVVEVNRNGGAFQPFQKEKTGSGGGMMSSSSDPVPAAETGLGGSSRREEKEAQNQRKQRRCWSPELHRRFLHALQQLGGSHVATPKQIRELMKVDGLTNGEVKSHLQKYRLHTKCPTPTIHNNETVQPPQFLVVGGIWVPASDYATTSSREAISAATTNGIYAPMVAAAAPQPLPSTVQKPKPRPMIPSSSAAAAITQYSSKAQAQAHDSFLLRRRSHYPVQFKSPSPGP 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4437223 4439784 + Cp4.1LG13g06810.1 Cpe13g00409 479607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00409 378 Gene3D - 204 261 - -
Cpe13g00409 378 MobiDBLite consensus disorder prediction 156 209 - -
Cpe13g00409 378 Pfam Myb-like DNA-binding domain 207 258 IPR001005 -
Cpe13g00409 378 PANTHER TRANSCRIPTION FACTOR HHO2 18 336 - -
Cpe13g00409 378 SUPERFAMILY Homeodomain-like 203 262 IPR009057 -
Cpe13g00409 378 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 205 260 IPR006447 GO:0003677
Cpe13g00409 378 MobiDBLite consensus disorder prediction 191 209 - -
Cpe13g00409 378 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 18 336 IPR044787 GO:0003700|GO:0006355
Cpe13g00409 378 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 202 262 IPR017930 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe09g00276 Cpe13g00409 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00989 Cpe-Chr7:9007488 Cpe13g00409 Cpe-Chr13:4437223 8.07E-53 dispersed
Cpe09g00276 Cpe-Chr9:1632809 Cpe13g00409 Cpe-Chr13:4437223 2.84E-77 dispersed
Cpe13g00409 Cpe-Chr13:4437223 Cpe18g00460 Cpe-Chr18:5577250 6.74E-47 dispersed
Cpe01g01799 Cpe-Chr1:14682230 Cpe13g00409 Cpe-Chr13:4437223 4.84E-165 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50402 PF00249 Myb_DNA-binding 2.70E-06 CL0123 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00409 - - csv:101210056 515.768