Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00410 ATGGCCACCTCCGTCATCCAGGGTTTTACCAAGTCGCTTGCCATGACTGTGCTCTCCGAGATCGGCGATAAAACATTCTTCGCGGCTGCGATCATGGCAATGCGGCATCCAAGGAGACTTGTCTTGTCTGGTTGTCTGTCAGCTTTGATTGTGATGACCATTCTTTCTGCTCTGGTTGGCTGGGCTGCCCCAAATTTGATCTCACGTAAATTGACTCACCATGTCACAACTCTTTTGTTCCTTGGTTTTGGGCTGTGGTCTTTATGGGATGTATTTAATAATGGAGGGGAGTCTGAAGAACTTGCTGAAGTTGAAGCTAAATTGGATGCTGATTTGAAGGCTAACAAAAAAGGTTCCAAAGATGGCAATAAGGTTGATGATGAAGTGAAGAAGCACAATCGGTCAATTCTCTTGCATTTCTTATCACCAATATATCTAAAGGCATTTTCCATTACCTTTTTTGGCGAATGGGGTGACAAGAGTCAGCTAGCGACCATTGGCTTAGCTGCAGATGAAGACCCACTAGGTGTCGTTCTTGGTGGAATTTTGGGACAGGCATTGTGTACAACTGCTGCAGTCCTTGGAGGAAGGAGCTTGGCGTCACAAATCTCTGAGAAAATTGTTGCTCTCTCAGGTGGGGTTCTGTTCATTGTTTTTGGAATCCAGTCGTTCCTCTCAACTGTCGAGCCGTAA 693 45.6 MATSVIQGFTKSLAMTVLSEIGDKTFFAAAIMAMRHPRRLVLSGCLSALIVMTILSALVGWAAPNLISRKLTHHVTTLLFLGFGLWSLWDVFNNGGESEELAEVEAKLDADLKANKKGSKDGNKVDDEVKKHNRSILLHFLSPIYLKAFSITFFGEWGDKSQLATIGLAADEDPLGVVLGGILGQALCTTAAVLGGRSLASQISEKIVALSGGVLFIVFGIQSFLSTVEP 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4443676 4450849 - Cp4.1LG13g06750.1 Cpe13g00410 479608

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00410 230 Pfam Uncharacterized protein family UPF0016 147 220 IPR001727 -
Cpe13g00410 230 Pfam Uncharacterized protein family UPF0016 11 84 IPR001727 -
Cpe13g00410 230 PANTHER TRANSMEMBRANE PROTEIN HTP-1 RELATED 3 228 IPR001727 -
Cpe13g00410 230 PANTHER GDT1 FAMILY PROTEIN 3 228 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00410 K23541 TMEM165, GDT1; Ca2+/H+ antiporter, TMEM165/GDT1 family - csv:101209565 400.979
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00795 Cpe-Chr7:7099495 Cpe13g00410 Cpe-Chr13:4443676 1.41E-27 dispersed
Cpe11g00678 Cpe-Chr11:4686268 Cpe13g00410 Cpe-Chr13:4443676 7.02E-54 dispersed
Cpe01g01798 Cpe-Chr1:14663352 Cpe13g00410 Cpe-Chr13:4443676 1.94E-158 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g276 . Blo16g01056 . Bda11g01139 Bpe13g01336 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0461 Cone9ag0473 . . . . . . . Bda11g01139 . . . Bma06g00766 . . . . . . Car15g00851 Cpe13g00410 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006913 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00410 Cpe_Chr13 FPKM 13.583795 17.281515 8.473432 8.889226 19.307432 17.489437 18.095596 12.795742 13.129871 12.934788