Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00411 ATGCAGAGCTTTGAAAACCCAGATCAGTTCTATGTCCATTCTTCTTCTTCTTCTTCCGTTGTTCTCTGGGGAGATGACAATGGACGATTCCACACGCGTTTTCTTCCGGATATGGAGCTTCAACAATCCGCTGTTGCTGTTGCTGCTTTTCATCAAGATGATGCTGTTGATTTAAGCCCAAGCTCTGTTTTCCGTTTAAAATCGACCCACAATACAGCTTTTCCAATCCACCTACCGTACGGGAGCACGGATGTGGGTTCAATAGGAGGAACAGGGTATTTAGACACGGGACAGCAATCGATGCGGTTGAAGAAGCTGGCTCCGCCGCAGACGATGGCGGCTGGGAGCTTTGAGAACTGGGGCGAGTCAGCCATGGCAGATACTAGCCAACAGACTGACACTTCCACAGACATCGACACCGATGAAAGAAACCAGCTTCAGGTAGTTGCACATGGAACTCTCATGGCGGACTCCATGGGTCAATCTAGAGCTAAATCTGTAGATCAAAAGACGCTTCGTAGGCTTGCTCAGAATCGAGAAGCAGCTCGGAAGAGTCGATTGAGGAAGAAAGGCATGTTTGTGGCTTCTGGGGCTGGAGACCATTGTTTATCAATGGCAGGAAATGGTGCCTTGGCATTCGATCTCGACTACGCGCGGTGGCTCGACGAGCATCAACGGCTTGTCAATGATCTAAGAGCATCTGCAAATTCTCAATTGGGAGATGAGGAATTGAGATTTCTTGTTGATGGGGTGATGGCACATTATGATGAACTCTTCAGGCTGAAGAGCATAGGCGCCAAGGCCGACGTTTTTCACATTCTTTCAGGCATGTGGAAGACTCCTGCTGAGAGGTGTTTCATGTGGCTGGGAGGATTCCGTTCGTCCGAGCTTCTAAAGATAGTTGGGAGCCATTTGGAGCCTCTAACAGATCAGCAGCTGATGGGTATATGCAATTTGCAGCAATCATCCCAACAAGCTGAAGATGCATTGTCACAAGGGATAGAAGCTTTGCAACAATCTCTTGTAGAAACTCTTTCCACTGCTTCTATAGGTCCAGCCAGTTCAGGGAATGTCGCTGATTACATGGGCCAAATGGCAATCGCTATGAGCAAGCTAACGACGCTCGAGAACTTTCTACATCAGGCTGATCTGTTGAGGCAACAAACGCTCCAACAGATGCATAGGATATTAACTACTCGTCAAGCTGCACGAGCGCTTCTTGTCATCAGTGATTACTTTTCACGTCTTCGAGCTCTCAGTTCACTATGGTTAGCACGACCAAGAGAGTGA 1290 48.06 MQSFENPDQFYVHSSSSSSVVLWGDDNGRFHTRFLPDMELQQSAVAVAAFHQDDAVDLSPSSVFRLKSTHNTAFPIHLPYGSTDVGSIGGTGYLDTGQQSMRLKKLAPPQTMAAGSFENWGESAMADTSQQTDTSTDIDTDERNQLQVVAHGTLMADSMGQSRAKSVDQKTLRRLAQNREAARKSRLRKKGMFVASGAGDHCLSMAGNGALAFDLDYARWLDEHQRLVNDLRASANSQLGDEELRFLVDGVMAHYDELFRLKSIGAKADVFHILSGMWKTPAERCFMWLGGFRSSELLKIVGSHLEPLTDQQLMGICNLQQSSQQAEDALSQGIEALQQSLVETLSTASIGPASSGNVADYMGQMAIAMSKLTTLENFLHQADLLRQQTLQQMHRILTTRQAARALLVISDYFSRLRALSSLWLARPRE 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4453535 4457232 + Cp4.1LG13g06710.1 Cpe13g00411 479609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00411 429 Pfam Seed dormancy control 228 301 IPR025422 GO:0006351|GO:0043565
Cpe13g00411 429 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 173 188 IPR004827 GO:0003700|GO:0006355
Cpe13g00411 429 PANTHER TRANSCRIPTION FACTOR TGA9 191 429 - -
Cpe13g00411 429 PANTHER TRANSCRIPTION FACTOR TGA9 50 190 - -
Cpe13g00411 429 ProSiteProfiles DOG1 domain profile. 210 426 IPR025422 GO:0006351|GO:0043565
Cpe13g00411 429 PANTHER TRANSCRIPTION FACTOR PERIANTHIA 191 429 - -
Cpe13g00411 429 PANTHER TRANSCRIPTION FACTOR PERIANTHIA 50 190 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00448 Cpe-Chr3:2531607 Cpe13g00411 Cpe-Chr13:4453535 2.08E-147 dispersed
Cpe08g01342 Cpe-Chr8:9665720 Cpe13g00411 Cpe-Chr13:4453535 1.04E-146 dispersed
Cpe09g00455 Cpe-Chr9:2944075 Cpe13g00411 Cpe-Chr13:4453535 9.61E-96 dispersed
Cpe13g00411 Cpe-Chr13:4453535 Cpe20g00685 Cpe-Chr20:4812582 4.04E-85 dispersed
Cpe01g01797 Cpe-Chr1:14649876 Cpe13g00411 Cpe-Chr13:4453535 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00411 K14431 - csv:101210308 717.227