Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00412 ATGGCGTCGGTGGCGTGTGGGTTTGTGAGCTGGTATGAGGTCTTCGTGTCGAGTGATAGAGGGAGAAGAGAGGTTCATTATTATCTGAAGCGTGGCGATGGGGGTTCAGATCTGGCCGTCGTGGGGAAGGAGAAGAGTTTGAGGCACATGACTTATCACTATGCATTGCGGGATCGCTTCCTTAGTTCTTCGCTCACCAAGCTTAAGTCTCGCAGAGAGGTCGTTGAATGGCTAAGCTCTGTTGTTTCTGGAGGTTTCTCCATTGGGGTTTTCATTCCTTACGAAATTCTTGAAACTATGCCTTTCCCAGTTAAGATTATGTCTTCCTATTCGCAACGTAAAACATCACAACCATCCGATCGTATAATGGACATAGAAGGTGAAGATGCTTGCCCGTCGACTGTTGTTTCTCAGAAGGACGTTCAACAGATAAAATTGGGTCAATATACCAGAGATTTTTCATGGCTAGGATCTCCATGGACCTGTAAGCGAAAGCGATGGCACTATCCATCTTTCAGCCGCAATGGTTTTAAGATCTCAGTTCATGACTTTGTATATGTCTTAGCCGAGGAAGGCAAACGTCTTGTTGCATATTTGGAGGATATGTATGAAGACTCTCGAAGCAACAGGATGGTTGTGGTACGATGGTTTCACAAAATTGATGAGGTTGATATTGTTTTGCCACACAATTTTAGTGACAGAGAGATTTACTTTTCTCTTTGTCTTCAAGATCTCAGTGTTGAATGCATAGATGGGGCGGCGACTGTTCTTAGTCCCCAGCATTTTGAGAAGTTCCAGAACGAGGCGAAACATACTTTATTGGAGCCGTATGTTTGTGAGAAGCAATTCGATAATGATGATATCAAACCCTTTGATATTACACAGGTCAAAGGCTATTGGAAGCAAGAAATACTCAGATACATGTACGCTCTTTCTTCTTCGAAAGCCCACACCCACTCTCAGCAGTCAGAAGATGACACGAGTGCTGAGATGAGGCCTCGAAAGAGGTATCGACGCTTGAGAAAAGATGACGTGCAAAATACTGAGAAGAGAAAACCTGGAAACATATCTTCTTCTCCTGACGTGTGCAGGAACAGCGGTGTTGTTTTCAGTCCCAAATGGGGTTGTGCTTCTAAAACTTTTATAGGCAAGGAGTTGAACAATGCTTCTTCTGGTCAGTTATCTGTAGGATCAGAGATTGAAGTTCTCTCGCACGACAGCGGTATTCGAGGGTGTTGGTTTAGAGCTTCAATAGTAAAAAAGCGCAGAGAGAAGGTCAAGGTGCAATATCACAATCTTCAGGATGCCGATGACGAGTCGAACAAGCTTATGGAATGGCTTTCAGCATCCAGAGTTGCAGCTGCTGATCAATTGGGTTTACGCATCAATGGACGATTAGTTATTCGTCCACAGCCCAGTAAGGATAGCAAAGCTGCATCGGTTTACAATGTCGGGACAATCGTTGATGTATGGTGGCACGACGGTTGGTGGGAAGGAATTATAATTCAGAAGGAATCCGAAGACAAGTTTCGAGTTTACTTGCCAGGTGAAAAGCAAGAATTGGTTCTTGGCCGAGACGATTTGAGGCATTCTCGAGAATGGATAGGAAACCGGTGGATGCATATGCAAGAAAGGCCAGATATCGCAACTTCAATTCTGTCCCGTCCAGCAAATGATGGCTTCCCTAACAAGACGTTGACCTTGTTGAGCCAAGATGCTGTTTGTGACAGCAAACAACCAGGAGAAGATCGAAGTCAATCAAGCGATCGAGTCAAGACTAAAGAACTGAGCACAGTTCCAGATCTGTCGAAGGACGGTTTGCTTGCCAAATTACGGTGGACGGGTTCGAAAAAAAGAAGCCAACCCAGTGGGAGCGGTTCATTGGCGAGTAGATCGGTTTCTTCTCCATCAACTTCTTCCAGTCCATGTGAAAGAGGTGCAACTCCAAACTCCATGAAAGTGGATCATGAGAACTGCAAATACCTGGGGGATTCTCTGTTCACTTCATCAGTCGTGCCTTCTCTCTCAAGCTTGCAATTCTGTATGGTTATGAAAATCAACGTCGATTGCAATGCTTGTTGTCGAAAACTTCGAAGGATTATCTTGAAAATGAAAGCGATCGAGAAGCATTTGATAGAGAAGGAGAGTCACAGACTGATCGTGTTTGGCAGATTCAGGCCGTCCGACATTGCCATTAAGATCCGGAGGAAGATGAATCGAAGAGTCGAGATTCTCGACGTCGAAGAAATGGAAGAACCCGAACCCGTTGCCGATCAAAACCCACCGCCGGAGCAAGCTCAAGTAGTCCCCGGAACCATTGCCGACCACAATCCCAACCCCATGTTTCCTTCTTTGGAGCATGATGATTGGAGGCCGCCCGTGTTTCCCTCTCTTGCCGCCCACCAATACCGTTCTTTTTCATCTTCTCGTCCTGATTTCGCCGTAGCTTGCTTGCCGGAGCCGGACATGGAGGAACGCTTCTGGCATTATGGTCATGACTATGAAGTTGTTGGAGATCGAGATCACACCTTCTCTTGTCACGATTACTACCATTACTAG 2559 45.68 MASVACGFVSWYEVFVSSDRGRREVHYYLKRGDGGSDLAVVGKEKSLRHMTYHYALRDRFLSSSLTKLKSRREVVEWLSSVVSGGFSIGVFIPYEILETMPFPVKIMSSYSQRKTSQPSDRIMDIEGEDACPSTVVSQKDVQQIKLGQYTRDFSWLGSPWTCKRKRWHYPSFSRNGFKISVHDFVYVLAEEGKRLVAYLEDMYEDSRSNRMVVVRWFHKIDEVDIVLPHNFSDREIYFSLCLQDLSVECIDGAATVLSPQHFEKFQNEAKHTLLEPYVCEKQFDNDDIKPFDITQVKGYWKQEILRYMYALSSSKAHTHSQQSEDDTSAEMRPRKRYRRLRKDDVQNTEKRKPGNISSSPDVCRNSGVVFSPKWGCASKTFIGKELNNASSGQLSVGSEIEVLSHDSGIRGCWFRASIVKKRREKVKVQYHNLQDADDESNKLMEWLSASRVAAADQLGLRINGRLVIRPQPSKDSKAASVYNVGTIVDVWWHDGWWEGIIIQKESEDKFRVYLPGEKQELVLGRDDLRHSREWIGNRWMHMQERPDIATSILSRPANDGFPNKTLTLLSQDAVCDSKQPGEDRSQSSDRVKTKELSTVPDLSKDGLLAKLRWTGSKKRSQPSGSGSLASRSVSSPSTSSSPCERGATPNSMKVDHENCKYLGDSLFTSSVVPSLSSLQFCMVMKINVDCNACCRKLRRIILKMKAIEKHLIEKESHRLIVFGRFRPSDIAIKIRRKMNRRVEILDVEEMEEPEPVADQNPPPEQAQVVPGTIADHNPNPMFPSLEHDDWRPPVFPSLAAHQYRSFSSSRPDFAVACLPEPDMEERFWHYGHDYEVVGDRDHTFSCHDYYHY 852
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 4457646 4462936 - Cp4.1LG13g06650.1 Cpe13g00412 479610

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00412 852 Pfam BAH domain 179 286 IPR001025 GO:0003682
Cpe13g00412 852 SMART agenet_At_2 392 458 IPR014002 -
Cpe13g00412 852 SMART agenet_At_2 480 536 IPR014002 -
Cpe13g00412 852 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 6 679 - -
Cpe13g00412 852 MobiDBLite consensus disorder prediction 616 647 - -
Cpe13g00412 852 MobiDBLite consensus disorder prediction 319 333 - -
Cpe13g00412 852 SMART BAH_4 177 294 IPR001025 GO:0003682
Cpe13g00412 852 Pfam Agenet domain 397 472 IPR008395 -
Cpe13g00412 852 ProSiteProfiles BAH domain profile. 177 294 IPR001025 GO:0003682
Cpe13g00412 852 Gene3D - 679 752 - -
Cpe13g00412 852 MobiDBLite consensus disorder prediction 574 598 - -
Cpe13g00412 852 MobiDBLite consensus disorder prediction 577 598 - -
Cpe13g00412 852 MobiDBLite consensus disorder prediction 613 651 - -
Cpe13g00412 852 PANTHER AGENET AND BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 6 679 - -
Cpe13g00412 852 Gene3D - 148 293 IPR043151 -
Cpe13g00412 852 MobiDBLite consensus disorder prediction 318 360 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00412 - - - csv:101211122 1010.75
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00814 Cpe-Chr2:5212763 Cpe13g00412 Cpe-Chr13:4457646 1.55E-101 dispersed
Cpe06g00805 Cpe-Chr6:5155522 Cpe13g00412 Cpe-Chr13:4457646 2.38E-84 dispersed
Cpe13g00412 Cpe-Chr13:4457646 Cpe05g00973 Cpe-Chr5:6334931 1.00E-10 dispersed
Cpe20g00115 Cpe-Chr20:641583 Cpe13g00412 Cpe-Chr13:4457646 1.65E-20 transposed
Cpe01g01793 Cpe-Chr1:14586686 Cpe13g00412 Cpe-Chr13:4457646 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g293 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0454 Cone9ag0466 . . . . . . . . . . Bma01g00164 . . . . . . . . Cpe13g00412 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004134 1 5 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 2 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe13g00412 Cpe_Chr13 FPKM 2.209856 2.14481 5.904052 6.730557 8.743779 6.719903 8.987808 1.198597 1.475546 1.535107